BAC Information

Click to search

BAC

Clone NameMSMg01-496O18
Chromosome13 (Build37)
Map Location 109,164,802 - 109,374,179
singlet/doubletdoublet
Overlap geneDepdc1b
Upstream geneApoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524
Downstream genePde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496O18.T7 (MSMg01no496_o18.b1)MSMg01-496O18.TJ (MSMg01no496_o18.g1)
ACCAG573613AG573614
length762773
length of high quality
(start - end)		653 (70 - 722)418 (325 - 742)
definitionCHROMAT_FILE: MSMg01no496_o18.b1 PHD_FILE: MSMg01no496_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005CHROMAT_FILE: MSMg01no496_o18.g1 PHD_FILE: MSMg01no496_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,164,802 - 109,165,457)(109,373,842 - 109,374,179)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTCTCTTTTCTCTGTGATGCCCCCTGAGCCTCATGGGGGTGATGGG
ATGTCCCAGATATGGTGGGACATTGACAAGTCGCTTATCCTCAGCACTGA
TCACTTACAAGTCTCTGCAGTAGCCATTGTCACTGAGAGAAGCTGAGAGC
TGCACCACCCTATGTCTGTGCCCGTGGATCTTCAGAAGGCAGATGATGAG
GTGGTGGTCAAACATATCCATTTACCCTAACAACAGCGGTAGCTTCTCCA
CTAGTGCCGAGGGCTCTTGTTCGTTCTTTCTTTTCATAAGCCATGTTTGC
GGTACCAGACATTCCTCCCTTCCCATGGAGTAGGACCTCAAATCCAGGCA
GCAAGGGGTTGCCCCCCTCCCTAGCCGTCATGCTTCTGTCCCAGCAGTGC
AGGGTCTACCGATGGGTAAGACTGCTGGTGCCTCTTTGCCCCTAGCAGCC
TGGGCAGTCCCTTCCTGCACAGTAAAAGCTAGCCACATAGGCATTTTGGA
AATAAAAACCGACAGAGTGCTTACATGTTGCTTCAGAAAGGAGCAAAAGA
AAACAGCTGACCTGTAAACCAGAGCAAAGACCAGCGAGTTGTCTCTGAAG
GAAAAGCAGGGTGTCGTTCATCCCTCTTCTATAAGATTAGAACTCTCTTG
GTAAAGAATGTGAACTTGACATTGACTCTTCATGGCTAAGTCCATTAGTC
TAAGTATGACTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGCAGTACCTGGAGGCAGAAACTA
AAACAGAACAGAGTTTATGGACTAGCTCTTATTTGTACATAGAATATCTT
ATGTCTGTATTGATGTGGCACCTGCCCATAAGAAATATTTTCCCCATGGC
TTAGGCAGGAAATAGAAGGTGGAACATTCGAGAGAAGAGAGAATTTTGGG
ATAGAGACAGGTAGAAGATTCTCACAGGAAAATGTGACAAGACAGATGCA
TGGTATCTGAGCACATGTTTTTTGTCATGAGGCACAATTAGGTTAAAATA
AATGGGTTTTTATAGTCATTATCTAGTCAGAGAAGAGAATAGTTGTATGG
CTGAGGTATTTGCAAATATATTTTGAGTCCAAGTATTATTCCTGGAAGCA
TGAGGCTAGGAGGACGATCTTTTACACTTATTAATGTTATTAATTTGCTT
TCTTATGTCTACTCAGCCTGCTTCTTTGTACCATCCAGGACCAGCTCTCC
AGGATTGTCTCTAAAACCAGTGGGCTGGACCCTCCCACATCAATCATCAA
TAAAATATGAAATGAAAGATAACAAAAAATATACCTCAGACTTGCTCATT
GGCCAGTTTTATAAACACATTACTATAGTTAAGATTCCCTCTTCCTAGAC
ACACCTAGGTTTGTGAAGAGCTGACAAAACAAGAAGTATACCTTCCAGTG
TTGGGAAGTCCTCAAAGACTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_o18.b1 MSMg01no496_o18.b1 CHROMAT_FILE:
MSMg01no496_o18.b1 PHD_FILE: MSMg01no496_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:25 2005
         (653 letters)



>mm_chr13_109164605_109165657
          Length = 1053

 Score = 1156 bits (598), Expect = 0.0
 Identities = 641/656 (97%), Gaps = 3/656 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgccccctgagcctcatgggggtgatgggatgtcccagatatggtgggacattgacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gatgccccctgagcctcatgggggtgatgggatgtcccagatatggtgggacattgacaa 257

                                                                       
Query: 61  gtcgcttatcctcagcactgatcacttacaagtctctgcagtagccattgtcactgagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtcgcttatcctcagcactgatcacttacaagtctctgcagtagccattgtcactgagag 317

                                                                       
Query: 121 aagctgagagctgcaccaccctatgtctgtgcccgtggatcttcagaaggcagatgatga 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 318 aagctgagagctgcaccaccctatgtctgtgaccgtggatcttcagaaggcagatgatga 377

                                                                       
Query: 181 ggtggtggtcaaacatatccatttaccctaacaacagcggtagcttctccactagtgccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtggtggtcaaacatatccatttaccctaacaacagcggtagcttctccactagtgccg 437

                                                                       
Query: 241 agggctcttgttcgttctttcttttcataagccatgtttgcggtaccagacattcctccc 300
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 agggctcttgtttgttctttctttttataagccatgtttgcggtaccagacattcctccc 497

                                                                       
Query: 301 ttcccatggagtaggacctcaaatccaggcagcaaggggttgcccccctccctagccgtc 360
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||
Sbjct: 498 ttcccatggagtaggacctcaaatccaggcagcaaggggttggttccctccctagccatc 557

                                                                       
Query: 361 atgcttctgtcccagcagtgcagggtctaccgatgggtaagactgctggtgcctctttgc 420
           ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 558 atgctcctgtctcagcaatgcagggtctaccgatgagtaagactgctggtgcctctttgc 617

                                                                       
Query: 421 ccctagcagcctgggcagtcccttcctgcacagtaaaagctagccacata-g--gcattt 477
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||
Sbjct: 618 ccctagcggcctgggcagtcccttcctgcacagtaaaagctagccacatacgacgcattt 677

                                                                       
Query: 478 tggaaataaaaaccgacagagtgcttacatgttgcttcagaaaggagcaaaagaaaacag 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tggaaataaaaaccgacagagtgcttacatgttgcttcagaaaggagcaaaagaaaacag 737

                                                                       
Query: 538 ctgacctgtaaaccagagcaaagaccagcgagttgtctctgaaggaaaagcagggtgtcg 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctgacctgtaaaccagagcaaagaccagcgagttgtctctgaaggaaaagcagggtgtcg 797

                                                                   
Query: 598 ttcatccctcttctataagattagaactctcttggtaaagaatgtgaacttgacat 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttcatccctcttctataagattagaactctcttggtaaagaatgtgaacttgacat 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no496_o18.g1 MSMg01no496_o18.g1 CHROMAT_FILE:
MSMg01no496_o18.g1 PHD_FILE: MSMg01no496_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:25 2005
         (418 letters)



>mm_chr13_109373362_109374179
          Length = 818

 Score =  646 bits (334), Expect = 0.0
 Identities = 337/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 77  ctgaggtatttgcaaatatattttgagtccaagtattattcctggaagcatgaggctagg 136
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctgaggtatttgtaaatatattttgagtccaagtattattcctggaagcatgaggctagg 759

                                                                       
Query: 137 aggacgatcttttacacttattaatgttattaatttgctttcttatgtctactcagcctg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aggacgatcttttacacttattaatgttattaatttgctttcttatgtctactcagcctg 699

                                                                       
Query: 197 cttctttgtaccatccaggaccagctctccaggattgtctctaaaaccagtgggctggac 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cttctttgtaccatccaggaccagctctccaggattgtctctaaaaccagtgggctggac 639

                                                                       
Query: 257 cctcccacatcaatcatcaataaaatatgaaatgaaagataacaaaaaatatacctcaga 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cctcccacatcaatcatcaataaaatatgaaatgaaagataacaaaaaatatacctcaga 579

                                                                       
Query: 317 cttgctcattggccagttttataaacacattactatagttaagattccctcttcctagac 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 cttgctcattggccagttttataaacacattactatagttaagattccctcttcctagac 519

                                                 
Query: 377 acacctaggtttgtgaagagctgacaaaacaagaagta 414
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acacctaggtttgtgaagagctgacaaaacaagaagta 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |