Query= MSMg01no497_j13.b1 MSMg01no497_j13.b1 CHROMAT_FILE:
MSMg01no497_j13.b1 PHD_FILE: MSMg01no497_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:21 2005
(585 letters)
>mm_chr13_70619361_70620346
Length = 986
Score = 1091 bits (564), Expect = 0.0
Identities = 582/590 (98%), Gaps = 5/590 (0%)
Strand = Plus / Plus
Query: 1 aaggtggatgggtttagatctacctcacaggggaatccctgtgttcatcctccagcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtggatgggtttagatctacctcacaggggaatccctgtgttcatcctccagcctaa 260
Query: 61 aggctgataaacacctcccttattggtataaaatactgccatgacaaagacttggtgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgataaacacctcccttattggtataaaatactgccatgacaaagacttggtgcag 320
Query: 121 agatacaacccgattcctagtcatatctttacaggatcataaacacacacagtgataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatacaacccgattcctagtcatatctttacaggatcataaacacacacagtgataaaa 380
Query: 181 ggttctgcatttcagagtcaggaggggg-aaggatgctcatatgggggagtataaagccc 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ggttctgcatttcagagtcaggaggggggaaggatgctcatatgggggagtataaagccc 440
Query: 240 atcagactccctgaggaactataggcagttcttagttgttagaagagagggactcattcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagactccctgaggaactataggcagttcttagttgttagaagagagggactcattcc 500
Query: 300 tctgccatgtggctacctgtaagttgtccctacttgagcaaataacccctaacccatact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgccatgtggctacctgtaagttgtccctacttgagcaaataacccctaacccatact 560
Query: 360 catgcaagtaactcgaattaaaagcagtgttccatgaacaaacagacaagaatacctgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgcaagtaactcgaattaaaagcagtgttccatgaacaaacagacaagaatacctgaa 620
Query: 420 aataggagaaacatacctggagcaccattgtctggccacagctctgctggcctctatcag 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataggagaaacatgcctggagcaccattgtctggccacagctctgctggcctctatcag 680
Query: 480 acctgctgaacaaggacatccaagttagatcccttccccca----gttccattgcctgtc 535
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 gcctgctgaacaaggatatccaagttagatcccttcccccacccagttccattgcctgtc 740
Query: 536 cccctgggcagtctcagctgccctgatctagctgcaggttgcctgacttc 585
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccctgggcagtctcagctgccctgatctagctgcaggttgcctgacttc 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_j13.g1 MSMg01no497_j13.g1 CHROMAT_FILE:
MSMg01no497_j13.g1 PHD_FILE: MSMg01no497_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:21 2005
(662 letters)
>mm_chr13_70798426_70799486
Length = 1061
Score = 924 bits (478), Expect = 0.0
Identities = 502/510 (98%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 1 cctagaaagagaagggacagaggacatgaacaggtaaagtgggctggacacatggccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cctagaaagagaagggacagaggacatgaacaggtaaagtgggctggacacatggccaag 450
Query: 61 aagtgcatgtgacctcgctggtgataagtaagcaggatccagacaatgacgtgtttgtcg 120
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 aagtgcatgtgacctcg-tggtgataagtaagcaggatccagacaatgatgtgtttgtcg 391
Query: 121 gtgaggacttcataaagaggaactgtaaccttcatgttggattggctaagagatgatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtgaggacttcataaagaggaactgtaaccttcatgttggattggctaagagatgatcag 331
Query: 181 ttgacagcctggccccatgtgtgcagtcagtagcttcctctagggcttttgtgaggactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgacagcctggccccatgtgtgcagtcagtagcttcctctagggcttttgtgaggactt 271
Query: 241 tcatctctcccttccccactttcctcctgggccactgagtatccccctgcatgaagtaaa 300
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcaccacacccttccccactttcctcctgggccactgagtatccccctgcatgaagtaaa 211
Query: 301 atgtgaaggatcacttcacctctgtttctgcctacaagccatttcacatctgtatcaacc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 210 atgtgaaggatcacttcacctctgtttctgcctacaagccgtttcacatctgtatcaacc 151
Query: 361 tgacccagttgctattatagggacactcatgattgcatttaggtccttccctgaaaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tgacccagttgctattatagggacactcatgattgcatttaggtccttccctgaaaaaca 91
Query: 421 agagcaaaccttctatcgcaagatcacatcttccaagtctccattgccacaggagggaca 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 agagcaaaccttctatcccaagatcacatcttccaagtctccattgccacaggagggaca 31
Query: 481 gaggctgaacatgacagaagcagttatgat 510
|||| |||||||||||||||||||||||||
Sbjct: 30 gaggttgaacatgacagaagcagttatgat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
