Query= MSMg01no497_n23.b1 MSMg01no497_n23.b1 CHROMAT_FILE:
MSMg01no497_n23.b1 PHD_FILE: MSMg01no497_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:42 2005
(529 letters)
>mm_chr13_19503226_19504154
Length = 929
Score = 911 bits (471), Expect = 0.0
Identities = 501/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Minus
Query: 5 gaattctcactgtta-ttgtggtcctgagctacaagagagaccacattgagctaaacggt 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gaattctcactg-gagttgtggtcctgagctacaagagagaccacattgagctaaacggt 574
Query: 64 ttcaccaaaatgcaactgaatccctcatgtttggagggaacaggatggaaatgaccaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcaccaaaatgcaactgaatccctcatgtttggagggaacaggatggaaatgaccaaat 514
Query: 124 tcactgattactggggttggcaaagttctaccaagtcccaacattagctatgggatcata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcactgattactggggttggcaaagttctaccaagtcccaacattagctatgggatcata 454
Query: 184 aattttattttctttgtgttttcaacttcttagagataatttgctgcatctgaatcagac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aattttattttctttgtgttttcaacttcttagagataatttgctgcatctgaatcagac 394
Query: 244 ttttcaatgagctttttagggtgttccatcctattcactataatgaataaattagcattc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttttcaatgagctttttagggtgttccatcctattcactataatgaataaattagcattc 334
Query: 304 aaaatccactcagagtagacccaaatgtctcattttgttttagaatccattgtctgatag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaatccactcagagtagacccaaatgtctcattttgttttagaatccattgtctgatag 274
Query: 364 catggattctccacctcccaatgtcctttcatggtcacattctttccagaagtgtcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catggattctccacctcccaatgtcctttcatggtcacattctttccagaagtgtcattt 214
Query: 424 tctttctttttccttccttccttccttccttccttccttccttccttccttccttccttc 483
|||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||| |
Sbjct: 213 tctttctttttccttccttccttccttccttccttccttcgttcctccctccctccctcc 154
Query: 484 cttccttcctccctcccttccttccttcctt 514
|| ||| ||||||||||||||||||||||||
Sbjct: 153 ctccctccctccctcccttccttccttcctt 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_n23.g1 MSMg01no497_n23.g1 CHROMAT_FILE:
MSMg01no497_n23.g1 PHD_FILE: MSMg01no497_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:43 2005
(221 letters)
>mm_chr13_19302834_19303455
Length = 622
Score = 391 bits (202), Expect = e-113
Identities = 217/222 (97%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 1 agaaacttctgggaaaaccctagaaaaa-gtagaataagacttctcaacctgtgtgagca 59
|||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 201 agaaacttctggaaaaaccctagaaaaaggtagaataaaacttctcaacctgtgtgagca 260
Query: 60 tggcccacatttcaaggcagagtgtgttcagtcctgagattcttgattacacttaaactt 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tggcccacatttcaaggcagagtgtgttcagtcctaagattcttgattacacttaaactt 320
Query: 120 gatgtgactttgtttcagttttgtctccatttaatatcaacagagccaaatttgtatatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtgactttgtttcagttttgtctccatttaatatcaacagagccaaatttgtatatt 380
Query: 180 catataaatagtaaaatattgctgggtgttttacgtgttcac 221
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 catataaatagtaaaatattgctgggtgttttacatgttcac 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space: 129956
Effective search space used: 129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
