BAC Information

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BAC

Clone NameMSMg01-498D21
Chromosome13 (Build37)
Map Location 11,768,930 - 11,935,117
singlet/doubletdoublet
Overlap geneRyr2
Upstream geneLOC100039648, Zp4
Downstream geneLOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498D21.T7 (MSMg01no498_d21.b1)MSMg01-498D21.TJ (MSMg01no498_d21.g1)
ACCAG574615AG574616
length763753
length of high quality
(start - end)
420 (48 - 467)438 (59 - 496)
definitionCHROMAT_FILE: MSMg01no498_d21.b1 PHD_FILE: MSMg01no498_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:11 2005CHROMAT_FILE: MSMg01no498_d21.g1 PHD_FILE: MSMg01no498_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,768,930 - 11,769,323)(11,934,681 - 11,935,117)
sequence
NCCATTAGTCCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTACGTTTACGTGCACCTGCTTATTATCATGGACATGTCTTA
CAAACAGAAATATATAATTCTTTGGGCATAAGTGTTACGATAAGTTTTAA
TGCCCCTTTCTCAGATAAACAGTCTCTTCTATACTAAACTGTGCTCCTTA
TATAAATACCAAGCATCCTCTGGATTTAGACTTCATGAATTAGAAACTGA
ATCTGGACTGATTATCTGAAGATCAGTCAGAGGCAATGGCAGAGGTGATA
ACCAGAAGGTATCTTAATGATGACCGTGTTGTTGAGTGTCTTTATCGTCC
TTTCCTACCTTGGGGTCCCAGGAAATTCACAGAAGTTATCAGTGGGGCAT
TCCATGTAACCACAGCTTATATTCTTTAGTCAGTATCACAGCCCCAAACC
CACTACCCCTCAGTAGAGATTCCAGAGTTATGAGAGCAGATGGAGCCTCT
GGCTCTTCACCATTTCCAGCCCCATGAACTCCCCAGGGACTCCTTACAGG
GATATCCTTTTGCTCATGGTGAATTGTTATACACCAATTTCCTTCTTACT
GTCCCTTAACCCTGGTTTCCAAAATTAAGTTCTGGGTGGAAAAGACCCCC
CGAAGCCCAACCTGGAAGGTTTAGCCCCCCCGGGGCGAGGGGATTTCTCT
AGGGGGTTCCCTTCAAAATTTTAGGAAAACCCGGGGTTCTGGTCCCCCCC
GTGGGCTTTTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTTCACACCTGTAGGTTTTCTAAGGCATATTTTCTACTTTT
AGAACTTTTGACTGGCTCTCACAGATGCCTTTACATGTCAGTTTTAATCA
TAAGGTAGGCCCTGCCAGGTATATATATGTATTGTAAGCCAGTGTAATTT
TCTTGTAGCTTAAAATGCCACCGACGTGTTCCTTAGTAGCTGAACTCCCT
CCCTCGTGCACCATGAATAGAAGTCTTTTGCCACTGAGGTGATGGAATGA
CAGCCTCATATGAGACTAGCAATGCCATTAAAAGCACTGTGGAAATGAGG
GCAAAAATCGACGGAAACTTTTCTAGGCTGAGATTCTTTGTGTAGTATTT
TATTTAAGATTTTTATATTTTGTTCTGAGTTCTCTCCCTCTCTCCTTCCC
TCCCTTGCCCCTCTCCCTCACCTTCCCTCAGACTTGCTCTGTAGCTGAGG
GTGACCTTGACTTTCTGATCCTCTTGTCTCAGTTCTTGAGTGCTGGTAAA
AAAGCATGCATCGCCATGACTGTATATGCAATTTGTGCTAGAGACCCAGC
CCGGGGCTTTACACATGCTAGGAAGCAGCCTCACACCTGAACTAATTCTC
AGCCCTCCAAGCATACACTCTCCCACAAAGAAAATGAAGTTGAAGTTAAC
TGTCTATATTGGGCACATAAACCGCTTACCAATTTGATGTCCATGTCTTT
TGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_d21.b1 MSMg01no498_d21.b1 CHROMAT_FILE:
MSMg01no498_d21.b1 PHD_FILE: MSMg01no498_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:11 2005
         (420 letters)



>mm_chr13_11768709_11769523
          Length = 815

 Score =  719 bits (372), Expect = 0.0
 Identities = 391/400 (97%), Gaps = 7/400 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  gtgcacctgcttattatcatggacatgtcttacaaacagaaatatataattctttgggca 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gtgcacctgcttattatcatggacatgtcttacaaacagaaatatataattctttgggca 281

                                                                       
Query: 82  taagtgttacgataagttttaatgcccctttctcagataaacagtctcttctatactaaa 141
           ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaatgttacgataagttttagtgcccctttctcagataaacagtctcttctatactaaa 341

                                                                       
Query: 142 ctgtgctccttatataaataccaagcatcctctggatttagacttcatgaattagaaact 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctgtgctccttatataaataccaagcatcctctggatttagacttcatgaattagaaact 401

                                                                       
Query: 202 gaatctggactgattatctgaagatcagtcagaggcaatggcagaggtgataaccagaag 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaatctggactgattatctgaagatcagtcagaggcaatggcagaggtgataaccagaag 461

                                                                       
Query: 262 gtatcttaatgatgacc-gtgttgttgagtgtctttatcgtcctttcctaccttggggtc 320
           ||||||||||||||||| | ||||||||||||||||||||||||     |||||||||||
Sbjct: 462 gtatcttaatgatgacccg-gttgttgagtgtctttatcgtcct-----accttggggtc 515

                                                                       
Query: 321 ccaggaaattcacagaagttatcagtggggcattccatgtaaccacagcttatattcttt 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ccaggaaattcacagaagttatcagtggggcattccatgtaaccacagcttatattcttt 575

                                                   
Query: 381 agtcagtatcacagccccaaacccactacccctcagtaga 420
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 agtcagtatcacagccccaaacccactacccctcagtaga 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 815
Length adjustment: 9
Effective length of query: 411
Effective length of database: 806
Effective search space:   331266
Effective search space used:   331266
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no498_d21.g1 MSMg01no498_d21.g1 CHROMAT_FILE:
MSMg01no498_d21.g1 PHD_FILE: MSMg01no498_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:11 2005
         (438 letters)



>mm_chr13_11934546_11935383
          Length = 838

 Score =  822 bits (425), Expect = 0.0
 Identities = 434/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcacacctgtaggttttctaaggcatattttctacttttagaacttttgactggctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 atttcacacctgtaggttttctaaggcatattttctacttttagaactttcgactggctc 513

                                                                       
Query: 61  tcacagatgcctttacatgtcagttttaatcataaggtaggccctgccaggtatatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcacagatgcctttacatgtcagttttaatcataaggtaggccctgccaggtatatatat 453

                                                                       
Query: 121 gtattgtaagccagtgtaattttcttgtagcttaaaatgccaccgacgtgttccttagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtattgtaagccagtgtaattttcttgtagcttaaaatgccaccgacgtgttccttagta 393

                                                                       
Query: 181 gctgaactccctccctcgtgcaccatgaatagaagtcttttgccactgaggtgatggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gctgaactccctccctcgtgcaccatgaatagaagtcttttgccactgaggtgatggaat 333

                                                                       
Query: 241 gacagcctcatatgagactagcaatgccattaaaagcactgtggaaatgagggcaaaaat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gacagcctcaaatgagactagcaatgccattaaaagcactgtggaaatgagggcaaaaat 273

                                                                       
Query: 301 cgacggaaacttttctaggctgagattctttgtgtagtattttatttaagatttttatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cgacggaaacttttctaggctgagattctttgtgtagtattttatttaagatttttatat 213

                                                                       
Query: 361 tttgttctgagttctctccctctctccttccctcccttgcccctctccctcaccttccct 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 212 tttgttctgagttctctccctctctccttccctcccctgcccctctccctcaccttccct 153

                            
Query: 421 cagacttgctctgtagc 437
           |||||||||||||||||
Sbjct: 152 cagacttgctctgtagc 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)