Query= MSMg01no498_e23.b1 MSMg01no498_e23.b1 CHROMAT_FILE:
MSMg01no498_e23.b1 PHD_FILE: MSMg01no498_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:17 2005
(517 letters)
>mm_chr13_35069161_35070077
Length = 917
Score = 843 bits (436), Expect = 0.0
Identities = 486/504 (96%), Gaps = 6/504 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcacagtactgataaataaaacttttcataaatcaagccttaagaattcatgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gaattcttcacagtactgataaataaaacttttcataaatcaagccttaagaattcatgt 440
Query: 65 tgggttttggcaatagaaagtcttacatctcttgacataaatggatgctgccttgaaccc 124
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 tgggtttcggcaatagaaagtcttacatctcttgacataaatggatgctgctttgaaccc 380
Query: 125 tgaggcagagtccttgaaacctgctgacatcgtatccctgacaccatggtagctgtttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgaggcagagtccttgaaacctgctgacatcgtatccctgacaccatggtagctgtttat 320
Query: 185 catgcacagg-ggtgactaagcaaattaggccaaacatcaacagtctttgggtcaccaaa 243
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 catgcacaggtggtgactaagcaaattaggccaaacatcaacagcctttgggtcaccaaa 260
Query: 244 ggtgctctgagtggcattttcttttccaactatctggcaaaggagcaaagcaaatcatct 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 259 ggtgctctgagtggcattttcttttccaactatctggc-aaggagcaaagcaa---atct 204
Query: 304 tcatttccacttgtcttagttagggtttctattgttgtgaattaacaccatgaccacagc 363
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 203 tcattttcacttgtcttagttagggtttctattgttgtgaagtaagaccatgaccacagc 144
Query: 364 aatccctataaaggaaagcgtttactcggggctgttttacagtttagtagtttagtccat 423
|| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 143 aa-acctataaaggaaagcatttactcagggctgttttacagtttagtagtgtagtccat 85
Query: 424 taacatcatggtgggaagcatggcagtgtgcaagcagacatggtgttagtcactgagcgt 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tatcatcatggtgggaagcatggcagtgtgcaagcagacatggtgttagtcactgagcgt 25
Query: 484 tctacatatggatcagtaggcagg 507
|||||||||||| |||||||||||
Sbjct: 24 tctacatatggaacagtaggcagg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_e23.g1 MSMg01no498_e23.g1 CHROMAT_FILE:
MSMg01no498_e23.g1 PHD_FILE: MSMg01no498_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:17 2005
(503 letters)
>mm_chr13_34936440_34937342
Length = 903
Score = 890 bits (460), Expect = 0.0
Identities = 493/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Plus
Query: 1 atgtgaatgagccttagcaaattgcctttgtatatctatggttttcaccacgtattaacc 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 201 atgtgaatgagccttagcaaattgcccttgtatatctatggttttcaccacgtatttacc 260
Query: 61 acttgcaggccccaacagttttgtcacttccccacacttgtatcatccctt-gttagaat 119
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 261 acttgcaggccccaacagttttgtcacttccccacacatgtatca-ccctttgttagaat 319
Query: 120 ggtataaaaatttcaatatctaaccacattttacggtatctgcttccttctctgggaacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 320 ggtataaaaatttcaatatctaaccacattttacggtatctgcttccttctctgggagcc 379
Query: 180 ttatacatatgtaaattttaaatactagcatcaagcaaaatacatatgccttttctattg 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 ttatacatatgtaaattttaaatactagcatcaagcaaaatatatatgccttttctattg 439
Query: 240 ttcatttgtctttagtcagtcgtattttgtaggatcatggacactgaacctaagaagtta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcatttgtctttagtcagtcgtattttgtaggatcatggacactgaacctaagaagtta 499
Query: 300 gaaggaaaagttgttctcccttacaaagatctgtcacagtctgtttgctgtccccagaaa 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 gaaggaaaagttgttctcccttacaaagatctgtcacagtctgtatgctgtccccagaaa 559
Query: 360 tgaacagcaacactgggaaggcagaatatgctgggggaaagattgagccaggatagatca 419
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 560 tgaacagcaacactgggaaggcagaatatgctcggggaaagtttgagccaggatagatca 619
Query: 420 tctgcaagacaggctgacgtacccacgtctccttaacagcaaccttgggtccaggaggca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctgcaagacaggctgacgtacccacgtctccttaacagcaaccttgggtccaggaggcg 679
Query: 480 aaatcatcagtttgaggggggtgg 503
||||||||||||||||||||||||
Sbjct: 680 aaatcatcagtttgaggggggtgg 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
