Query= MSMg01no498_h07.b1 MSMg01no498_h07.b1 CHROMAT_FILE:
MSMg01no498_h07.b1 PHD_FILE: MSMg01no498_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:30 2005
(175 letters)
>mm_chr13_58577331_58577901
Length = 571
Score = 311 bits (161), Expect = 1e-89
Identities = 167/171 (97%), Gaps = 4/171 (2%)
Strand = Plus / Plus
Query: 1 tgtctctcatctgcatgcaaaacactctgagatctgttatctttgagagaataagcctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtctctcatctgcatgcaaaacactctgagatctgttatctttgagagaataagcctgt 260
Query: 61 ctgtcttgcttctttgagaattccacgtgatgtgtttggatcatactcacccctcttcac 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ctgtcttgcttctttgagaattccacgtgatgtgtttggatcatac----ccctcttcac 316
Query: 121 ccctaacccctcccagatccagccccgccccctcttcacccctaacccctc 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccctaacccctcccagatccagccccgccccctcttcacccctaacccctc 367
Score = 66.5 bits (34), Expect = 9e-16
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 110 cccctcttcacccctaacccctcccagatccagc 143
||||||||||||||||||||||||||||||||||
Sbjct: 423 cccctcttcacccctaacccctcccagatccagc 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 571
Length adjustment: 8
Effective length of query: 167
Effective length of database: 563
Effective search space: 94021
Effective search space used: 94021
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no498_h07.g1 MSMg01no498_h07.g1 CHROMAT_FILE:
MSMg01no498_h07.g1 PHD_FILE: MSMg01no498_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:30 2005
(246 letters)
>mm_chr13_58748654_58749302
Length = 649
Score = 408 bits (211), Expect = e-118
Identities = 238/249 (95%), Gaps = 5/249 (2%)
Strand = Plus / Minus
Query: 1 aggggagatacgcaaagtgtagtgtagaaaatgagcaaattttgctgcagaaaaaaaggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 448 aggggagatacgcaaagtgtagtgtagaaaatgagcaaattttgctgcagaacaaaa-gg 390
Query: 61 ggac----acgggagccttttatagctttttctctgatggtccccttaagcctggactcc 116
|||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 389 ggacatggaggggggccttttatagctttttctctgagggtccccttaagcctggactcc 330
Query: 117 caattgcttgctcaactcattcattttacacatgaaaggagagatgacacagtctggtgt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caattgcttgctcaactcattcattttacacatgaaaggagagatgacacagtctggtgt 270
Query: 177 ctgctgtggctgaaggaaggggtacagatgcccctccttacactgtaaaatgactcctgg 236
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctgcggtggctgaagggaggggtacagatgcccctccttacactgtaaaatgactcctgg 210
Query: 237 gggccacta 245
|||||||||
Sbjct: 209 gggccacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 649
Length adjustment: 9
Effective length of query: 237
Effective length of database: 640
Effective search space: 151680
Effective search space used: 151680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
