BAC Information

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BAC

Clone NameMSMg01-498O20
Chromosome13 (Build37)
Map Location 36,706,715 - 36,707,073
singlet/doubletsinglet
Overlap genenone
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758
Downstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498O20.T7 (MSMg01no498_o20.b1)MSMg01-498O20.TJ (MSMg01no498_o20.g1)
ACCAG575132AG575133
length776772
length of high quality
(start - end)
611 (47 - 657)359 (331 - 689)
definitionCHROMAT_FILE: MSMg01no498_o20.b1 PHD_FILE: MSMg01no498_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:10 2005CHROMAT_FILE: MSMg01no498_o20.g1 PHD_FILE: MSMg01no498_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGCGGA
ATTCTATATGGCTTTCCCTATACCTTCGTTTGGATTGGCCCTCTCCCTTA
CCCTCTGACCTCCCCCATACTCTACCTCTCTCTTTGTTTAAGCCTCCCAG
CTTTCAGTATTCCACTTCCGTACTCTATTTTGTCTATACCTGACTATCCC
CCTCCCTTACATTCCCCCCCTAAGAAGCCCCTCTCTACTTTCCTCCCTTC
CACTTGTGCTTCAAGTTAAATATACAAAACAAAATTGAAAGCTAGTATCC
ACATATGAGAGAGAACAGATGGCATTTACCTTTCTGAGCCAGAGTTACCT
TGTTTGCTATAATTTTTTTTTCAGTTCTATCCATTTACCTTTAAATTTTA
TGGTTTCATTTTTTTTTACAGCTGAGTAATATTCCACTGTGTGTATGTGC
CACATTTTTCTCATCCATTGACTTGTTAATGGACATTTCAGTTGACTCTA
TTTCCTAGCTATTGTGACTAAGGCAGAAATGAACACGATACTCAAGTGTC
TCCATATTAGTATAAACAGTCCTTTGAGCACACGCTCGGAGTGGTATAGA
TGAGTCATTTGGCAGTTCTAGTTCTAGTTTTTGGAGAAACCTCCAGACTG
ATTTCCAAGCCACTGCCTGACTTTACACTCACACCCATGCTGTCTAAGAA
TTTCTCTTCCCAACATCCACAACAGCATTTGGTGGTATTTGTGTTCCTAG
GGATGGGCATTCTGACTGGGGTAAGA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGAAAATCGTGGCCTTTCTCGTGACACAGCCCTT
CCACTGCAGTACTCACCTATTGCTGAGTAACAAAGGCCTTCACATTCTGG
CAGCTTCATACAGTAAACATGGATCCTCTCTCTCTCAGTTTGGGAGATCT
CCTGTAGCTGAGGGGTCTGGTTTAGGATCTGTATGGAGATAGGTCAGCTC
TCAGCTGCTGATAGGCTGTTTTGGCATTTGCTTATGTGGTTGTAAGAGGC
TTAGCTCCTCACTGTGTTGACTTTGTGCTTGATCACCAGAATGTCCTCAA
GAGGAGACAACTCTCCAAAAAATGTGAGAAAGAAAGAAGCCAGAATCTTC
TACAGCCCAGTCTTGTAAGAGGCTCTTGGGTGTGTGTCTGTGCAACAACA
GATAGAAATTAAATTGAGAAATTGCTTCTGAGTGGAATATGCCTGGACAC
TTCCTTGCCATTATTATCCAAACAATGTAACAACTATTAAAAGAGAATCT
ACACTGTGTTCAACATCACAAGAACGTGGAGATGCTTTCCCTACAGCAGA
GGATATTAGGTCACATGCAAATGCTATATCTGGTCACTGTGGGTTTTCAG
CACAAGTCCTGGCATGAATCCCCCATGGACACTGAGGGACAGTTGTCTTA
CTTATACATCCCTTNCAACTGTGGTGGTATTTCCACAAAACTAGTTCAGA
AACTGGACCATGACTCTACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_o20.g1 MSMg01no498_o20.g1 CHROMAT_FILE:
MSMg01no498_o20.g1 PHD_FILE: MSMg01no498_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:10 2005
         (359 letters)



>mm_chr13_36706515_36707273
          Length = 759

 Score =  663 bits (343), Expect = 0.0
 Identities = 355/359 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcaccagaatgtcctcaagaggagacaactctccaaaaaatgtgagaaagaaagaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatcaccagaatgtcctcaagaggagacaactctccaaaaaatgtgagaaagaaagaagc 260

                                                                       
Query: 61  cagaatcttctacagcccagtcttgtaagaggctcttgggtgtgtgtctgtgcaacaaca 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaatcttctatagcccagtcttgtaagaggctcttgggtgtgtgtctgtgcaacaaca 320

                                                                       
Query: 121 gatagaaattaaattgagaaattgcttctgagtggaatatgcctggacacttccttgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagaaattaaattgagaaattgcttctgagtggaatatgcctggacacttccttgcca 380

                                                                       
Query: 181 ttattatccaaacaatgtaacaactattaaaagagaatctacactgtgttcaacatcaca 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattatccaaacagtgtaacaactattaaaagagaatctacactgtgttcaacatcaca 440

                                                                       
Query: 241 agaacgtggagatgctttccctacagcagaggatattaggtcacatgcaaatgctatatc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 agaacgtgaagatgctttccctacagcagaggatattaggtcacatgcaaatgctatatt 500

                                                                      
Query: 301 tggtcactgtgggttttcagcacaagtcctggcatgaatcccccatggacactgaggga 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtcactgtgggttttcagcacaagtcctggcatgaatcccccatggacactgaggga 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)