Query= MSMg01no499_d07.b1 MSMg01no499_d07.b1 CHROMAT_FILE:
MSMg01no499_d07.b1 PHD_FILE: MSMg01no499_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:32 2005
(598 letters)
>mm_chr13_72271404_72272401
Length = 998
Score = 1079 bits (558), Expect = 0.0
Identities = 588/598 (98%)
Strand = Plus / Plus
Query: 1 cccagcaggatcacatttcaggcaatctaggagacctggggggaggcatctggctgcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccagcaggatcacatttcaggcaatctaggagacctggggggaggcatctggctgcacc 260
Query: 61 cttccttgtgccttacatgatgttcggctgttcagcgtctgcgccacttaggacaacaag 120
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 261 cttccttgtgccttacatgatgttcggctgttcagcatctgtgccacttaggacaacaag 320
Query: 121 tgcttagcaggccgcacttcaaactgctgagggctcacgatcctgcagtgagaaaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttagcaggccgcacttcaaactgctgagggctcacgatcctgcagtgagaaaacaga 380
Query: 181 tccctgtatccattactgggaacttgatctctctgaccttgcctctaaaagtcaaacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgtatccattactgggaacttgatctctctgaccttgcctctaaaagtcaaacagg 440
Query: 241 aaagtaccagtctggattctcctacagggaaggaaacggctctgctagctgtcagcagac 300
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 aaagtaccagtctggaagctcctacagggaaggaaatggctctgctagctgtcagcagac 500
Query: 301 agggaaaggagagctcttcttccagatagatagcatggcttctgatgctggccccagcat 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 agggaaaggagagctcttcttccagatagatagcatgacttctgatgctggccccagcat 560
Query: 361 gatcactttgaccttgatgagcttgctaccctcccactgaagccaagagcagaaaatagc 420
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gataactttgaccttgattagcttgctaccctcccactgaagccaagagccgaaaatagc 620
Query: 421 aatggtgatcacaggttccactgatgaagcctaggtccgctgcacacatagaggaaggac 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 aatggtgatcacaggttccactgatgaagcctaggtccgctgcacacatggaggaaggac 680
Query: 481 tcgctgaggaatgagagtatcgaagtagggactcaacacctcttttccccaccacacact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgctgaggaatgagagtatcgaagtagggactcaacacctcttttccccaccacacact 740
Query: 541 cctgacacatgcctgtgggttggcttgttcactcccctctctaccccgttactctcat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgacacatgcctgtgggttggcttgttcactcccctctctaccccgttactctcat 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_d07.g1 MSMg01no499_d07.g1 CHROMAT_FILE:
MSMg01no499_d07.g1 PHD_FILE: MSMg01no499_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:32 2005
(633 letters)
>mm_chr13_72393014_72394053
Length = 1040
Score = 853 bits (441), Expect = 0.0
Identities = 491/511 (96%), Gaps = 7/511 (1%)
Strand = Plus / Minus
Query: 1 agtgaatgccctttataacctccacccacatcccattggtcccaagcaagtatattctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agtgaatgccctttataacctccacccacatcccattggtcccaagcaagtatattctcc 452
Query: 61 aagttgcagttcctgattggctgtcactgtcatagcaatctct------t-gggaaggct 113
||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 451 aagttgcagttcctgattggctgtcactgtcatagcaatctctaggctctcgggaaggct 392
Query: 114 tcagtttggctctcatgcagcggttacctccacagctgttcttcttacagggagcgtcat 173
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 391 tcagtttggctcccatgcagcggttccctccacagctgttcttcttacagggagcgtcat 332
Query: 174 agttttatattcaggtgcaaggagataggaaatttactacagggtataagaactgggtac 233
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 331 agttttatattcaggtgcaaggagataggaaatttactgcagggtataagaactgggtac 272
Query: 234 agctatggaagcttgttctatttttgagagacttatggctgaataagatgtaaattattc 293
|||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 271 agctatggaagcttgtcctaagtttgagagacttatagctgaataagatgtaaattattc 212
Query: 294 ctgcaaaattagtgagaaaaccaaaagcaaggtagggggacagttatttggcttttactt 353
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 211 ctgcaaaattagtgagaaaaccaaaagcaagatagggggacagttatttggcttttactt 152
Query: 354 ccacatcattgtttgtcattgaagaaagttagaacaagaacttaaataggacaagaatct 413
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ccacatcattttttgtcattgaagaaagttagaacaagaacttaaataggacaagaatct 92
Query: 414 cgaggcatgagcttatgcagaagccatggaggggtgcttcttattagctcaggccctgtg 473
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 91 tgaggcatgagcttatgcagaggccgtggaggggtgcttcttattagctcaggccctgtg 32
Query: 474 gcttgctcaacctgctttcttatagaaccaa 504
||||||||| |||||||||||||||||||||
Sbjct: 31 gcttgctcagcctgctttcttatagaaccaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1040
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1030
Effective search space: 641690
Effective search space used: 641690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
