BAC Information

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BAC

Clone NameMSMg01-499H06
Chromosome13 (Build37)
Map Location 66,723,166 - 66,723,775
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499H06.T7 (MSMg01no499_h06.b1)MSMg01-499H06.TJ (MSMg01no499_h06.g1)
ACCAG575531AG575532
length758763
length of high quality
(start - end)
594 (68 - 661)650 (80 - 729)
definitionCHROMAT_FILE: MSMg01no499_h06.b1 PHD_FILE: MSMg01no499_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005CHROMAT_FILE: MSMg01no499_h06.g1 PHD_FILE: MSMg01no499_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATACGCGGAATTCAAGT
TCTTATTCCACATATCTTTCATTTTCTTATATAGAATCACACCAAGGTAT
TTCATATTATTTGTGACTATTGTGAAGGGTGTTGTTTCCCTAATTTCTTT
CTCATCCGGTTTATCCTTTGTGTAGAGTATAAGGCCTTAGCTTCACACAA
TATACTGTGACCAAGGTACATAAGTAAATAAACAGTTTTCTCACATGTTT
CTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTAAGACATCACCTAAC
TGGTAAATTGACTCTGTTGGTTATTTGGAATCTCATAGATTCCTGATGCA
ATAAAAGGCACTGATTTGAAAAGAGAAAGAAGAATGAATGTTAGCAGAGT
AAGAAGCACCGTGACAGTAATGCATGTGATAGCACAGAAGCACTGCACTT
TGGGATAGCTTTCCAATGTACTAGGGAGATGTTAAGAATACCAGATAACA
TACAACGACGGGAACATTCTATGAAAAGGACATTGAGATTCAGATTGTGC
CTGCAAAATAAGGCTTTGTAAATGTATGTGAAAAGACAGTTTCATTATGA
AATGACTGTGTTTCATTAAGTGAGAAAAATCACTAATGGAAATATCTCCC
ACAAGAACTTCACCACAGTGAGGTCAGTGATTTCTATGGACATATAAATC
ACTCTAGATGAAGGGTCTCATCATAAATTTTATCAAAATATGAGACTAAA
GATTATTT
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTTCTTAAAAATCGGATGAACATAAGATCATATTTGTGAGT
GAATCATTTGTCACATTCACTACATTTATAAGGTTTTTCTCCTGTATAAA
CTCTGATGAATAGTAAGGTTATATTTTTGGATAAAGCTTTTTGTCACATT
CACTACATTTGTAAGGCTTCTTTCTTGTATGAATTATCTGATGACTACTA
TGACTGTGTTTGTTGTTACAGCATTTGTCACACTCACTACATTTATAAGG
TTTCTCTCCAGTATGAATTCNCTAATGAATATTAAGACTGTATTTGTGAA
AAAAGCATTTGTCACATTCACTACATCTGTAAGGTTTCTCTCCTGTATGG
ATTCTCTGATGTTGCCCAAGCTTGCATTTCTTGGTGAAACATCTGGCACA
TTCACATCTGTAAGGTTTCTTTCCACTATTGGTTTGTTTCAGCCTGAGTA
TTTGCTTAGAGTTAAAAACCTTATCAAGCACTATACCATTGTGCTCTTTC
TTTCCTATGTGGATTCCTTGATGTAGACCAGTGATAGAACACAAATTGAA
ACAGTTTATACAGTTTTTATGTTTGCAAGGGCCTCTGGTGTTTCCATTTT
GCTGACTGTTTATGTTTGATGACTCAACACATGTATTCCTGAAGTTAGCT
TGGTAAAGTACACTTTGGGCGTCATGAATAATTTTTGCCATGCTTTGACC
TTTGTAAGACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_h06.g1 MSMg01no499_h06.g1 CHROMAT_FILE:
MSMg01no499_h06.g1 PHD_FILE: MSMg01no499_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:50 2005
         (650 letters)



>mm_chr13_66722936_66723985
          Length = 1050

 Score =  868 bits (449), Expect = 0.0
 Identities = 573/618 (92%), Gaps = 17/618 (2%)
 Strand = Plus / Plus

                                                                       
Query: 32  tcacattcactacatttataaggttt-ttctcctgtat-aa--actctgatgaatagtaa 87
           ||||||||||||||||| |||||||| || |||||||| ||  | | |||||| || |||
Sbjct: 231 tcacattcactacatttgtaaggtttctt-tcctgtatgaattatt-tgatgactactaa 288

                                                                       
Query: 88  ggttatatttttggataaagctttttgtcacattcactacatttgtaaggcttctttctt 147
             ||| |||||||| |||||| ||| || ||||||||||||||||||||||||||||| |
Sbjct: 289 cattacatttttgggtaaagcattt-gttacattcactacatttgtaaggcttctttcct 347

                                                                       
Query: 148 gtatgaattatctgatgactactatgactgtgtttgtt-gttacagcatttgtcacactc 206
           |||||||||||||||||||| ||| ||||||||||||  || ||||||||||||||||||
Sbjct: 348 gtatgaattatctgatgacttctaggactgtgtttgtcagt-acagcatttgtcacactc 406

                                                                       
Query: 207 actacatttataaggtttctctccagtatgaattcnctaatgaatattaagactgtattt 266
           ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct: 407 actacatttataaggtttctctccagtatgaattctctgatgaatactaagactgtattt 466

                                                                       
Query: 267 gtgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcctgtatggattct 326
           ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 467 gtgcaaaaagcatttgtcacattcactatatatgtaaggtttctctcctgtatggattct 526

                                                                       
Query: 327 ctgatgttgcccaagcttgcatttcttggtgaaacatctggcacattcac---atctgta 383
           |||||||   | |||||||||||||||||||||||||||||||| |||||   |||||||
Sbjct: 527 ctgatgt---ctaagcttgcatttcttggtgaaacatctggcacgttcactacatctgta 583

                                                                       
Query: 384 aggtttctttccactattggtttgtttcagcctgagtatttgcttagagttaaaaacctt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggtttctttccactattggtttgtttcagcctgagtatttgcttagagttaaaaacctt 643

                                                                       
Query: 444 atcaagcactataccattgtgctctttctttcctatgtggattccttgatgtagaccagt 503
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 644 atcaagcactataccattgtgttctttctttcctatgtggattccttgatgtagaccagt 703

                                                                       
Query: 504 gatagaacacaaattgaaacagtttatacagtttttatgtttgcaagggcctctggtgtt 563
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 704 gatagaacacaaatttaaacagtttatacagtttttatgtttgcaaggtcctctggtgtt 763

                                                                       
Query: 564 tccattttgc-tgactgtttatgtttgatgactcaacacatgtattcctgaagttagctt 622
           |||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 764 tccatttt-catgtctgtttatgtttgatgactcaacacgtgtattcctgaagttagctt 822

                             
Query: 623 ggtaaagtacactttggg 640
           |||||| |||||||||||
Sbjct: 823 ggtaaaatacactttggg 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)