Query= MSMg01no499_j19.b1 MSMg01no499_j19.b1 CHROMAT_FILE:
MSMg01no499_j19.b1 PHD_FILE: MSMg01no499_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:02 2005
(620 letters)
>mm_chr13_59477393_59478412
Length = 1020
Score = 1168 bits (604), Expect = 0.0
Identities = 616/620 (99%)
Strand = Plus / Plus
Query: 1 attattctgaaagacttccaatcagaggagtcaaaagtaagattgtcaaccacaccttta 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 attattctgaaagacttccaatcataggagtcaaaagtaagattgtcaaccacaccttta 260
Query: 61 tcattttctgacctcaaaatagctcttgagttttaggttgatcttccccctggctagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattttctgacctcaaaatagctcttgagttttaggttgatcttccccctggctagaag 320
Query: 121 catgacttaagagggctatctcagacctactactatgattccaagattgagagcacaaag 180
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 321 catgacttaagagggctatctcaaacctactgctatgattccaagattgagagcacaaag 380
Query: 181 cctttgaatgtttcaaggtggaactggaacaaaaggatgaaccaattccctgcttgcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttgaatgtttcaaggtggaactggaacaaaaggatgaaccaattccctgcttgcatt 440
Query: 241 ggtcagactctgataccagagtcaacgccaagggttacagtgtctccaccaagggttaga 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcagactctgagaccagagtcaacgccaagggttacagtgtctccaccaagggttaga 500
Query: 301 gtgtctccgctgggtcaagctaggtccttggaccttgggtatagtaaatgcttgccagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtctccgctgggtcaagctaggtccttggaccttgggtatagtaaatgcttgccagag 560
Query: 361 cctactttctgcagagtctctccagggccttgttggattctgtccatccacaccccactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctactttctgcagagtctctccagggccttgttggattctgtccatccacaccccactc 620
Query: 421 cctgctcaggagtctggctttgtaacccttactggaactcaaattggaagaatattatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctgctcaggagtctggctttgtaacccttactggaactcaaattggaagaatattatgt 680
Query: 481 tagtgatgttacgtctttccaaatacaaccagtgcaatatggcagtgtccatctgtgaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagtgatgttacgtctttccaaatacaaccagtgcaatatggcagtgtccatctgtgaag 740
Query: 541 aacacagtgtccattctcccagtggccggccctaattttctggatccaagcaaaactggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacacagtgtccattctcccagtggccggccctaattttctggatccaagcaaaactggc 800
Query: 601 ttttcacagctgatgaaaat 620
||||||||||||||||||||
Sbjct: 801 ttttcacagctgatgaaaat 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_j19.g1 MSMg01no499_j19.g1 CHROMAT_FILE:
MSMg01no499_j19.g1 PHD_FILE: MSMg01no499_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:02 2005
(604 letters)
>mm_chr13_59615478_59616477
Length = 1000
Score = 1118 bits (578), Expect = 0.0
Identities = 597/606 (98%), Gaps = 6/606 (0%)
Strand = Plus / Minus
Query: 1 atgtatggattctttagttgtgttccattaaaattgatcaatttaagaaaacctatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 atgtatggattctttagttgtgttccattaaaattgatcaatttaagaaaacctatagtt 903
Query: 61 tttttacattaagattttactacctagaaaaaaacctattttataaccacatacta--tt 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 902 tttttacattaagattttactacctagaaaaaaacctattttataaccacatactatttt 843
Query: 119 tttttaccttctatgtacaataaattatattttaaattttatgttactaagaagtggata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tttttaccttctatgtacaataaattatattttaaattttatgttactaagaagtggata 783
Query: 179 tcttatataattgtggaataactagaactgttaattccactgggaagatgaattttataa 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 782 tcttatataattgtggaataactagaactgttaattccactgggaagataaattttataa 723
Query: 239 gtaacagtaggtataattcagtggattaaacagcttgtgatcgaaataagcaaaagtgat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gtaacagtaggtataattcagtggattaaacagcttgtgatcgaaataagcaaaagtgat 663
Query: 299 aacggctttaacaaagtcatgctcatagctggtcactcagggagtcttctgtctcatgaa 358
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 662 aacggctttaacaaagtcatgctcgtagctggtcactcaaggagtcttctgtctcatgaa 603
Query: 359 aaagacacttaagtttcaaaatatatggagttttaaaatcagtatactaaactaaatata 418
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 602 aaagacacttaagtttcaaaatatatggagttttaaaatcagta----aaactaaatata 547
Query: 419 attacagaccttgccatagtaaataaatgtattttcagtcttgttgagaccatgctgcca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attacagaccttgccatagtaaataaatgtattttcagtcttgttgagaccatgctgcca 487
Query: 479 tgaagacccgttggtctcacactgtggtctcatcttgactctgggtgtgctggggctgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgaagacccgttggtctcacactgtggtctcatcttgactctgggtgtgctggggctgca 427
Query: 539 ggtgtgcaccaccaagcccagccagtaagaagatgccagtatttgtaaatcatgataaaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtgtgcaccaccaagcccagccagtaagaagatgccagtatttgtaaatcatgataaaa 367
Query: 599 taatta 604
||||||
Sbjct: 366 taatta 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1000
Length adjustment: 10
Effective length of query: 594
Effective length of database: 990
Effective search space: 588060
Effective search space used: 588060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
