Query= MSMg01no500_f17.b1 MSMg01no500_f17.b1 CHROMAT_FILE:
MSMg01no500_f17.b1 PHD_FILE: MSMg01no500_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:59 2005
(612 letters)
>mm_chr13_19073197_19074207
Length = 1011
Score = 1079 bits (558), Expect = 0.0
Identities = 600/614 (97%), Gaps = 5/614 (0%)
Strand = Plus / Minus
Query: 1 cttaccccttca-ccggtatgtttaacttgattatttcctatctcctttgccattttttt 59
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cttacccctt-agccagtatgtttaacttgattatttcctatctcctttgccattttttt 753
Query: 60 catactttcctagcttcttgac-gagactactcatgctccagaaacacaaaagcatttaa 118
||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||
Sbjct: 752 -atactttcctagcttcttg-cggagactcctcatgctccagaaacacaaaagcatttaa 695
Query: 119 agtgatagctgcttcttgcatatagcatattcttattctatggcgtgcactgtatactgt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agtgatagctgcttcttgcatatagcatattcttattctatggcgtgcactgtatactgt 635
Query: 179 ggccggagctcattcccctgtcatgtctatatgtactttggatttcttttctattattta 238
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct: 634 ggccagagctcattcccctgtcgtgtctatatgtactttggatttcttttctatgaaata 575
Query: 239 aagtccttagcagaattccttgtaacttttcaaggaattgagttgtggtaaaccttgtga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aagtccttagcagaattccttgtaacttttcaaggaattgagttgtggtaaaccttgtga 515
Query: 299 agtgcttctacttctgtgaattttggagagagagaatatgacttgtgtgatttctgcttt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtgcttctacttctgtgaattttggagagagagaatatgacttgtgtgatttctgcttt 455
Query: 359 ttcatatattatgagataatcattacagcttaatacagtattatcgatatgaatattcct 418
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 454 tacatatattatgagataatcattacagcttaatacagtattaacgatatgaatattcct 395
Query: 419 gaagcactggggaaaccataaattctgagtttaaaggataaaataaatcacttgtgattt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaagcactggggaaaccataaattctgagtttaaaggataaaataaatcacttgtgattt 335
Query: 479 ataatatgtatgaaaataaaccagtatatcttccaaataatatatggatgtctatgtatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ataatatgtatgaaaataaaccagtatatcttccaaataatatatggatgtctatgtatt 275
Query: 539 atatctgatggttgagatgcccatatgcatagaattatatagcaagtattcgtataatat 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atatctgatggttgagatgcccatatgcatagaattatatagcaagtattcgtataatat 215
Query: 599 tagcattagaatca 612
||||||||||||||
Sbjct: 214 tagcattagaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1011
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1001
Effective search space: 602602
Effective search space used: 602602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_f17.g1 MSMg01no500_f17.g1 CHROMAT_FILE:
MSMg01no500_f17.g1 PHD_FILE: MSMg01no500_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:59 2005
(107 letters)
>mm_chr13_18902944_18903448
Length = 505
Score = 188 bits (97), Expect = 1e-52
Identities = 104/107 (97%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 1 tttagaaatgctcgccacctatcaggttgaaagcaaacttggtgtctctgtgcaaaacaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagaaatgctcgccacctatcaggttgaaagcaaacttggtgtctctgtgcaaaacat 260
Query: 61 gtttgtgctggatttgtgttacttacgcgccctccactaataacagc 107
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtttgtgctggatttgtgttacttacgc--cctccactaataacagc 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 107
Length of database: 505
Length adjustment: 8
Effective length of query: 99
Effective length of database: 497
Effective search space: 49203
Effective search space used: 49203
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
