Query= MSMg01no500_l23.b1 MSMg01no500_l23.b1 CHROMAT_FILE:
MSMg01no500_l23.b1 PHD_FILE: MSMg01no500_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:26 2005
(590 letters)
>mm_chr13_71684016_71685005
Length = 990
Score = 1106 bits (572), Expect = 0.0
Identities = 585/590 (99%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 1 aattctttaaaatgtttctaaccactttgttatgactctgtgggtcactgagaagcaggg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aattctttaaaatgtttctaaccactctgttatgactctgtgggtcactgagaagcaggg 260
Query: 61 taatgacatcagacataaagataaatgaacaagagttcagggttctggtccctctatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgacatcagacataaagataaatgaacaagagttcagggttctggtccctctatata 320
Query: 121 gtgattaaaaacaaaacaaaaaaacaaaaacaaaaacaacaaaaaaagtcctcattttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgattaaaaacaaaacaaaaaaacaaaaacaaaaacaacaaaaaaagtcctcattttcc 380
Query: 181 tacccactccacttcacactctccctcccctcctcatcttctcctgttccccaatccctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacccactccacttcacactctccctcccctcctcatcttctcctgttccccaatccctc 440
Query: 241 cccttctactattgaattaatgtttacttcatcaatctaggtggtgagtttgatacctgc 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttctactattgaattaatatttacttcatcaatctaggtggtgagtttgatacctgc 500
Query: 301 cccaatggtttatgttcctgtatgaaagaaacacacagaacctttatattttattatacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaatggtttatgttcctgtatgaaagaaacacacagaacctttatattttattatacc 560
Query: 361 ttaatcagcacaatagctgggccactgtctaaactccatgtggttagtccacctcttata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ttaatcagcacaatagctgggccactgtctaaactccatgtggttagtccacctcttgta 620
Query: 421 gataatcccaagttattacttactaaattctatattatatttaggctgctttggacccag 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gataatccc--gttattacttactaaattctatattatatttaggctgctttggacccag 678
Query: 481 aggacttgccaactgggccaagctctggcccacactctcctggctccttcccatgatggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aggacttgccaactgggccaagctctggcccacactctcctggctccttcccatgatggc 738
Query: 541 catggttctctgtcctgcactcttctccaggatcacatcactcctccttt 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 catggttctctgtcctgcactcttctccaggatcacatcactcctccttt 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_l23.g1 MSMg01no500_l23.g1 CHROMAT_FILE:
MSMg01no500_l23.g1 PHD_FILE: MSMg01no500_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:26 2005
(468 letters)
>mm_chr13_71811648_71812515
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Minus
Query: 1 tctaagtctctttgcaagatgggggtttgaaagccacctattataaaggtctttgatatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tctaagtctctttgcaagatgggggtttgaaagccacctattataaaggtctttgatatc 609
Query: 61 actgaggaggacagactctggaaggacagttctaggggttccaggagacattcaataata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 actgaggaggacagactctggaaggacagttctaggggttccaggagacattcaataata 549
Query: 121 agactggaagagccactgacaaagagacctttaacaactctcagtcagagagaggaagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agactggaagagccactgacaaagagacctttaacaactctcagtcagagagaggaagca 489
Query: 181 aagggccagcagctgataaggatccaaggaagagcctgaacttagaaagtgtgttgtggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagggccagcagctgataaggatccaaggaagagcctgaacttagaaagtgtgttgtggc 429
Query: 241 agtctgctggaggaggagactctccaactcctcagaacctcaaacacagaaagacaaccc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 428 agtctgctggaggaggagactctccaactcctcaaaacctcaaacacagaaagacaaccc 369
Query: 301 aaaatctaatgtgtagagtgggaaattgccggttccttcctcaaatctgactgagcgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaaatctaatgtgtagagtgggaaattgccggttccttcctcaaatctgactgagcgata 309
Query: 361 acaatgtagtaccagaagagaaatcacacccaacacatccccacagcctgttgcagatga 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 308 acaatgtagtaccagaagagaaatcacacccaacacatcctcacagcctgttgcagatga 249
Query: 421 gagctgcagtactcaacatcaacaaatccaaacccatgttgtgcttag 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gagctgcagtactcaacatcaacaaatccaaacccatgttgtgcttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
