BAC Information

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BAC

Clone NameMSMg01-500O08
Chromosome13 (Build37)
Map Location 8,769,849 - 8,770,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC791083, LOC382722, Adarb2, EG666941
Downstream geneWdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500O08.T7 (MSMg01no500_o08.b1)MSMg01-500O08.TJ (MSMg01no500_o08.g1)
ACCAG576623AG576624
length641573
length of high quality
(start - end)
238 (47 - 284)120 (65 - 184)
definitionCHROMAT_FILE: MSMg01no500_o08.b1 PHD_FILE: MSMg01no500_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:37 2005CHROMAT_FILE: MSMg01no500_o08.g1 PHD_FILE: MSMg01no500_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACAATAGTCAGGACTCGGCGGAATTCCTCAAGCTGCAAAAAACATGCCTG
CCCTAGCCTGGAGCAGAGACATCTTTCTGGTGGCATTTTTCTTTCTTGTT
GAGATTTTTTTTTTTTTTGAGCACAGAACATGAAGTTTATGATATATTGT
CTTAGTAAAAGGTTTAGCTCGGCGTCTGTTCCCAAGGAAAGGAACTTGGA
ATCCACTCCAACTCTTATTATGTGATCAGTACACATAAAGGTTGAAGGAC
AAAATGACCACAGCTGTGAGCGTTATGCTCTGGNGATGNCTCACCCTTGT
CCACTTTGGAGCTATTAAATCAAGTTCCTTTAGTTGAGTTTCACACGATG
ACAGAAATACACTCTTTCCAGTGAAAAAGCCACCCTCCCCAAAGGGCCAG
CTTCACAGAAAAGACACACAGAAGATGAAGTATAAAGGAGTGGGGTTGCA
GCTCGGTAGGCAGCATCCTTGCCTAGCACAAATGAAACTCTAGGTTACCT
CTGAAATACCTCATAAACTGCTAAGCGGTACATGCATGCCTGTAAGAACT
TAAGAGGTAGAATTATGGGGCGGGTCAGAAGTGCACTGTCACTCTTGGCT
ATATATTGAATTTGAGGACAGCCTTGGACAAAGACCGTGTA
GGTTTCAAAGACGACGGACCTGAGGAATACCGAATGGCTGAGAAGCACCT
GAAAATTTGTTCCGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGTTAAGATCAAAATTCAG
GTGACAGCATATGCTGGTGAGGATGTGGAGAAAGATTTTTTCTCCTCCAT
TGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCNCTAAATATTGGACATAGTACTACCAGAGGATCCTGCAATACCCC
TCCTGGGCATATATCCAGGAGAAGTTCCAACTGGTAATAAGGACACATGC
TCCACTATGCCCCCAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
AGTCAGATGCTCCTCTACAGAGGAATGGATACAGAAGATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGGCTGAATTTATGAAATTC
CTAGGCAAATGGATGGATCTGGAGGGTATCATCCTCAGAGAGGTAAACCA
ATCACAAAAGAACTCACATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_o08.b1 MSMg01no500_o08.b1 CHROMAT_FILE:
MSMg01no500_o08.b1 PHD_FILE: MSMg01no500_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:37 2005
         (238 letters)



>mm_chr13_8769649_8770290
          Length = 642

 Score =  422 bits (218), Expect = e-122
 Identities = 233/240 (97%), Gaps = 4/240 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgccctagcctggagcagagacatctttctggtggcatttttctttcttgttgagatt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 cctgccctagcctggagcagagacatctgtctggtggcatttttctttcttgttgagatt 260

                                                                       
Query: 61  tttttttttttt----gagcacagaacatgaagtttatgatatattgtcttagtaaaagg 116
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttttttttttgagcacagaacatgaagtttatgatatattgtcttagtaaaagg 320

                                                                       
Query: 117 tttagctcggcgtctgttcccaaggaaaggaacttggaatccactccaactcttattatg 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 tttagctcggcgtctgttcccaaggaaaggaacttggaatccactccaactcttaaaatg 380

                                                                       
Query: 177 tgatcagtacacataaaggttgaaggacaaaatgaccacagctgtgagcgttatgctctg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatcagtacacataaaggttgaaggacaaaatgaccacagctgtgagcgttatgctctg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 642
Length adjustment: 9
Effective length of query: 229
Effective length of database: 633
Effective search space:   144957
Effective search space used:   144957
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)