Query= MSMg01no501_d18.b1 MSMg01no501_d18.b1 CHROMAT_FILE:
MSMg01no501_d18.b1 PHD_FILE: MSMg01no501_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:02 2005
(685 letters)
>mm_chr13_89024242_89025326
Length = 1085
Score = 1265 bits (654), Expect = 0.0
Identities = 675/682 (98%)
Strand = Plus / Plus
Query: 4 gaattccttggtctttgcgattcattcttctaaaagattcaacaggcatagatgtctatt 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttggtccttgggattcattcttctaaaagattcaacaggcatagatgtctatt 263
Query: 64 acattaggaggtcattttaacgtgtattatctttaagaccctgcaaaaaatttatatgct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattaggaggtcattttaacgtgtattatctttaagaccctgcaaaaaatttatatgct 323
Query: 124 ataaagtcttatttgagaggtgttaggtaaattctattatgtgtatttaaaaatgttttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataaagtcttatttgagaggtgttaggtaaattctattatgtgtatttaaaaatgttttg 383
Query: 184 tattatagaatagaaaagctattggaaaggattaaatgatgacaatttaccttcagaatg 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttatagaatagaaaagctattggaaaggattaaatgatgacaatttaccttcagaatg 443
Query: 244 tttggaagaaagattgctgtttgttcctgcaaaggaaaattgcagctataattttagtga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttggaagaaagattgctgtttgttcctgcaaaggaaaattgcagctataattttagtga 503
Query: 304 ggtgaattttattaaatttaagaaatgttttaggttacatttctgtacattcgaattgaa 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtgaattttattaaatttaagaaatgttttaggttacatttctgtacattcgaattgat 563
Query: 364 gtaagaattcccaaaatcccatagtaggcttctcttcatatactttcattaatactattg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtaagaattcccaaaatcccatagtaggcttctcttcatatactttcattaatactattg 623
Query: 424 taaagagctaaattaactgcagaataataaaaataaagcagataatctaacgttcactgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taaagagctaaattaactgcagaataataaaaataaagcagataatctaacgttcactgg 683
Query: 484 agtctggcggctgattcaccattgtgatgggtggataagagtggagccgcctgctttcct 543
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 684 agtctggcagctgattcaccattgtgatgggtggataagagtggagccgcgtgctttcct 743
Query: 544 gcccactctccacttaaggagcatttcatattacatgtcaactttgaattcccagccaat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcccactctccacttaaggagcatttcatattacatgtcaactttgaattcccagccaat 803
Query: 604 tctcacttcgatcagctacacttaccttgatttttgttgacaaaatggtaatttccctat 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tctcacttcgatcagcttcacttaccttgatttttgttgacaaaatggtaatttccctat 863
Query: 664 attctctatctgaacttttact 685
||||||||||||||||||||||
Sbjct: 864 attctctatctgaacttttact 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_d18.g1 MSMg01no501_d18.g1 CHROMAT_FILE:
MSMg01no501_d18.g1 PHD_FILE: MSMg01no501_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:02 2005
(248 letters)
>mm_chr13_89206402_89207040
Length = 639
Score = 398 bits (206), Expect = e-115
Identities = 235/248 (94%), Gaps = 9/248 (3%)
Strand = Plus / Minus
Query: 1 taggatcttcaaaaagcttaaaaatacatctatatatgtatatgtgcataccaacctatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taggatcttcaaaaagcttaaaaatacatctatatatgtatatgtgcataccaacctatc 380
Query: 61 tttactggcattatattttcattctgttttatgtgatgctacttttaaaataaaaaaact 120
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct: 379 tttactggcattatattttcattctgttttatgtgatgctactt----aat-aaaaatct 325
Query: 121 tgtttctatatttgaaaccaaattatttttggtcgtttccattttacccacatattataa 180
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 324 tgtttctatatttgaaaccaaattatttttggtcatttccattttacccacataatataa 265
Query: 181 ctaactcactgtttgtgatcacagctgtgcttcctgtgtgcctaatctttgtatgaagcc 240
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaa--ca--gtttgtgatcacagctgtgcttcctgtgtgcctaatctttgtatgaagcc 209
Query: 241 caggcaga 248
|| |||||
Sbjct: 208 catgcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 639
Length adjustment: 9
Effective length of query: 239
Effective length of database: 630
Effective search space: 150570
Effective search space used: 150570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
