BAC Information

Click to search

BAC

Clone NameMSMg01-502B13
Chromosome13 (Build37)
Map Location 97,648,728 - 97,649,149
singlet/doubletsinglet
Overlap geneLOC625662
Upstream geneIqgap2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456
Downstream gene1700029F12Rik, EG620648, 5730427N09Rik, LOC100039663, Gfm2, Hexb, Enc1, LOC667676, LOC100039691, LOC100039704, EG328314, LOC100039526, LOC100039740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502B13.T7 (MSMg01no502_b13.b1)MSMg01-502B13.TJ (MSMg01no502_b13.g1)
ACCAG577534AG577535
length741742
length of high quality
(start - end)
421 (321 - 741)489 (77 - 565)
definitionCHROMAT_FILE: MSMg01no502_b13.b1 PHD_FILE: MSMg01no502_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:03 2005CHROMAT_FILE: MSMg01no502_b13.g1 PHD_FILE: MSMg01no502_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTCCTGAATAAATTCCAAACAAAATGTCCAGGATTGTGCCTT
GGGTGGGTTATTAAGATCTAAACCCACAGATGACGCTGAGAAAATTGCAT
CACCATCCCAACCTACTGCTCTTACTCCTCACGCAGAAAACTCACACGCA
GAAAACTCACAAGCAGAAGCTACAGTCAAAGGCTGTGGATTTGATAGTTC
TGCACTAACTGGCACTATAAATATTTCAGAAGATAAAAGCATATTTTCCC
CAATTGGTGCCTGTTTTTCAGCTGATCCTCACAGTCAGAAGCTTTCCCGC
TGTAATCCGAAAAGAAGAAACAAGAAGACAGCTTCCCAGCAACCATCTGC
GGGAGCTGCAGAGCCTCTGCCGCAGGCCACTGCTGTCTTAGACACCTACG
CTGTGCATCAGACACTGCCATGTCTTAGAGACTCCGCTGCTGCTGCTTCA
CACACAGATAGCACTCAGAGCTCTCTTTCCTCTGCGTCTGCCCATCAACA
TCCTACTAAAACCCTTCCACACCGCAACACAACTCCCAGAAAGAAAGCTG
TGCAGCTGAAAGACTTGATATTACGTGGAAGAATTAACCCAGGAAATAAC
ATTCTCGAATTTAAAACACAGGTATTTTTTTTCTCTAAAGTCTTTCAGAT
TTTATAAGTAGTGTTGGATAGCATAATAGAGGCATAAAGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGATCTCTTAACCACGGAGCCAT
CTTTCCAGCCCAAGAGGAGAAGTTTTAAAATGTATTTTTGAGCTTTGTGA
TTAACTTTTTTTAAAAAACATTTTTTAAAAAAGATTTATTTATTACTATA
TCCAAGTACACTGCAGCTGTCTGAAGATGCACCAGAAGAGGGCATCAGAT
CTCATTACAGATGGTCATGAGCCACCATGTGGTTGCTGGGATTTGAACTC
AGGACCTTCGGAAGATTTTTCAGTGCTCTTAACCACTGAGCCATCTCTCC
AGCCCTGAGATAAACTTATCTATGTTTTAAATCAGAAAGCAAGTGTTTGG
TTAGGGCAAGGGAATGAGGTGCATATTTTACAAATCAATGTAGACCTGGC
CTGCAAGTTATGCAGTTGGGTTTCCATCTAGGCTCTGCCCCACAGTTACC
TGGCAACAGGTGCCTCACTCACTATAAAAGGGCTGCTTGCCCCCACATCA
CTCTCATTCTCTTGCTCCTGTTCCTTACCACTTACCCTCTCTCTCTCACT
CTCTTCTCCCCTTTTTCTCCATCTCCATCTATGAAAGCCGGCTCCTCCTC
CTTCTCTTCCGCCTCTTCCTCTCCCTCCTCCTCCTCTTCCTCTTCCTCCT
CCGTCTTCTTCTTCTCTCTTTGTCTCTCTGTCTCTCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_b13.b1 MSMg01no502_b13.b1 CHROMAT_FILE:
MSMg01no502_b13.b1 PHD_FILE: MSMg01no502_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:03 2005
         (421 letters)



>mm_chr13_97648528_97649349
          Length = 822

 Score =  777 bits (402), Expect = 0.0
 Identities = 417/422 (98%), Gaps = 1/422 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgatcctcacagtcagaagctttcccgctgtaatccgaaaagaagaaacaagaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgatcctcacagtcagaagctttcccgctgtaatccgaaaagaagaaacaagaagaca 260

                                                                       
Query: 61  gcttcccagcaaccatctgcgggagctgcagagcctctgccgcaggccactgctgtctta 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gcttcccagcaaccatctgcgggagctgcagagcctctgccgcaggcccctgctgtctta 320

                                                                       
Query: 121 gacacctacgctgtgcatcagacactgccatgtcttagagactccgctgctgctgcttca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacctacactgtgcatcagacactgccatgtcttagagactccgctgctgctgcttca 380

                                                                       
Query: 181 cacacagatagcactcagagctctctttcctctgcgtctgcccatcaacatcctactaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacagatagcactcagagctctctttcctctgcgtctgcccatcaacatcctactaaa 440

                                                                       
Query: 241 acccttccacaccgcaacacaactcccagaaagaaagctgtgcagctgaaagacttgata 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accgttccacaccgcaacacaactcccagaaagaaagctgtgcagctgaaagacttgata 500

                                                                       
Query: 301 ttacgtggaagaattaacccaggaaataacattctcgaatttaaaacacaggtatttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacgtggaagaattaacccaggaaataacattctcgaatttaaaacacaggtatttttt 560

                                                                       
Query: 361 tt-ctctaaagtctttcagattttataagtagtgttggatagcataatagaggcataaag 419
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tttctctaaagtctttcagattttataagtagtgttggatagcatagtagaggcataaag 620

             
Query: 420 ga 421
           ||
Sbjct: 621 ga 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space:   334956
Effective search space used:   334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)