BAC Information

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BAC

Clone NameMSMg01-502E09
Chromosome13 (Build37)
Map Location 29,574,669 - 29,575,031
singlet/doubletsinglet
Overlap geneCdkal1
Upstream genePpia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E09.T7 (MSMg01no502_e09.b1)MSMg01-502E09.TJ (MSMg01no502_e09.g1)
ACCAG577667AG577668
length698812
length of high quality
(start - end)
362 (306 - 667)109 (71 - 179)
definitionCHROMAT_FILE: MSMg01no502_e09.b1 PHD_FILE: MSMg01no502_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005CHROMAT_FILE: MSMg01no502_e09.g1 PHD_FILE: MSMg01no502_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACAATCCAAAGAGGATCCGCGGAATTCTTCCTTGCT
GGAATATTTTGCACACAGCAGAAATTGAGATTTGGAAAGGAAAGCATGGC
TGAATACGTTCAGCATCGCTAATTAATTACAGCCCAAACAACTCTGCCAT
TCTGATACCTTGGAAGTCACTATACCTTCAGCTGTTGGCTGCTAACTACA
ATGGAGGAAAAAGCTAGCCCCCACCCCCATCTCTTAAGTCAGAAAGATAA
AGTAGGTGAAATCATTTTATTCAAGAGAAAATCCAATTACAGAAATAATC
AATTTTTCCCTCTTGCTTTATTTTTTCATATTTGAAAGGGCATTCACATT
AGCAGAACCAATTAAACGAATATCAAGACAGGGTACAAACTACAAAGTTG
GGCAAGTTCTTAAACCTTTTAAAATTAGACTATGAGGGGAAAAAAAAACC
ACTTATTGAAATTTTAGAAACTCAACCCTGGATCACAGGATTCTCTAATG
GGAAGCATTATCAGACGGGTGATAAACGCTGAATCTCGAGGATAATTTAT
AAATTTATATGGTCATAATACAATATTTCTAATATATAGTCCAGTATCAA
AACCAAATCAGTCTAATTAGCTCTCTTCATGGATATATTATCATTAAAAA
TTGGTATCTTGGGATCAGAGGTTGTAGATTCAGTGAGTAGATTACTTG
CCATGCTGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCCCAACAGAATTCTTTACTTTTGTTTTGGATTTTGGATTA
GAATGCTCAGCACATACCATAGAGGTGTGTGTGTGGTATATCTGGGTGTG
TAGGTATGTGGTTAAGTATATGGTGTGGTGNNNNNNNNNNNTTNTNNNTN
CNTNNNTNTTTTTCTTTCCTTTCCTCCTCCCCCCCCCCCCATTTTTTTTT
TCCCCCTCTCCCTCCCCTCCTCTTTCCCCCCCCTTTCTCCCCCCCCCCCC
CCCCNCCCCCCTTCCCCTCCGTTCCCCCCCCCNCCCCCCCCCCCTCCTCC
CCCTCTCTTTCTTCTCCCCCCCTCTCCCCTCTTTTCCTCCCCCCTCCTTC
CTCCCTTTACCCCTTCCTCCCCCCCTCCCCTTCCCTCTCCTTCTCCCCTT
CCCTCTCTCCCCTCCTCCCCTCCCACCTCCTCTTCCCTCCCTCCTCCTCC
TTCTTCCCTTTCTTTCTTTTCTCCCCTCCTCCTTCCCCCCCTTTTCCCCA
TTTCTCCTCCCATCTTCCCCCCCCTCCCCTCTTTTTCTCCCCCCCCTCCC
CCTATTTTTTTCTTCTTTCCCTTCCCCCCCCCCTTCTTCTCCCCCTCCCC
TCCCCCTTTCCCCCCCCCCCCTCTCCCTTCTTTTTTTGCCCCCTTGCCCC
CGTCCTTTCCCCCTTTTTCCTCCGTCCCTATCCCCCCCTCCTTTCCTCCC
CTCTTTCCCCCCCTTCTCTCCCTCCCTTCTTTTTCCTTCTCCCCCCTTCC
TCCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e09.b1 MSMg01no502_e09.b1 CHROMAT_FILE:
MSMg01no502_e09.b1 PHD_FILE: MSMg01no502_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (362 letters)



>mm_chr13_29574469_29575231
          Length = 763

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%), Gaps = 1/363 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccctcttgctttattttttcatatttgaaagggcattcacattagcagaaccaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccctcttgctttattttttcatatttgaaagggcattcacattagcagaaccaattaa 260

                                                                       
Query: 61  acgaatatcaagacagggtacaaactacaaagttgggcaagttcttaaaccttttaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgaatatcaagacagggtacaaactacaaagttgggcaagttcttaaaccttttaaaat 320

                                                                       
Query: 121 tagactatgagggg-aaaaaaaaaccacttattgaaattttagaaactcaaccctggatc 179
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagactatgaggggaaaaaaaaaaccacttattgaaattttagaaactcaaccctggatc 380

                                                                       
Query: 180 acaggattctctaatgggaagcattatcagacgggtgataaacgctgaatctcgaggata 239
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 acaggattctctaatgggaagcattatcagatgggtgataaacgctgaatctcgaggata 440

                                                                       
Query: 240 atttataaatttatatggtcataatacaatatttctaatatatagtccagtatcaaaacc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttataaatttatatggtcataatacaatatttctaatatatagtccagtatcaaaacc 500

                                                                       
Query: 300 aaatcagtctaattagctctcttcatggatatattatcattaaaaattggtatcttggga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcagtctaattagctctcttcatggatatattatcattaaaaattggtatcttggga 560

              
Query: 360 tca 362
           |||
Sbjct: 561 tca 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 763
Length adjustment: 9
Effective length of query: 353
Effective length of database: 754
Effective search space:   266162
Effective search space used:   266162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)