BAC Information

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BAC

Clone NameMSMg01-502K07
Chromosome13 (Build37)
Map Location 44,419,621 - 44,419,929
singlet/doubletsinglet
Overlap genenone
Upstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
Downstream geneEG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K07.T7 (MSMg01no502_k07.b1)MSMg01-502K07.TJ (MSMg01no502_k07.g1)
ACCAG577949AG577950
length726733
length of high quality
(start - end)
244 (71 - 314)324 (327 - 650)
definitionCHROMAT_FILE: MSMg01no502_k07.b1 PHD_FILE: MSMg01no502_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:44 2005CHROMAT_FILE: MSMg01no502_k07.g1 PHD_FILE: MSMg01no502_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCGAGAGGATCCGCGGA
ATTCCTTACTTTCTGAAAGCCCCTCGCCCTCTGAGGTTATATAAAGCGAT
TAAAAACTGCTGAGGACGGAGACTCAACCTGTACTGCTGCCTCCAAGTCA
CGCAGAGAGTCCCAGGGGTGGGGGGCAGCCTCCATGAGCCATTACCAAGG
CTGGGTAATGGGGTGGGCTTTGCAGTGGTATAGCTGTCTTTAACTCCTCT
GTCCACGTTTCTGTAATTCCTCACCCACACACCTTTAGATCACCAAGCTG
GAAAAAGTCACACATTATTATTCCTCAGGGGCACTGGCAGATAATGTCCT
CTCATTTTCCTTCTGGCATCTGGATGCTAGCAGAACTACTGACAGTGTCT
CTAATGGTACTTTGGAGTTCATGAGAGAATCTCAAAACATCTCAGTGGCT
TTTTATTAAATAACCATTTGGAAGTCACATGGGAAAAAAACCCAGTAAAA
GACAGATGCCAAATATGATAAGGCGTTCTTAGGGCCGTGATGCTCTGCCA
CAGAATTAGTTGTCAGCCCTGTGTATGACTTGATGCCTGTTTCTCAATGA
CCTATGTGGACACTCAAAAGCCTTGTCTGCCAGAGATATCATGAATTATG
ATGGTATGGACCTTACAATGAGGAACTAGGATGTTAGACCGTGTTTCAAG
GGCTGGGAATTTGCGTTTCTTTCCTA
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCATTATTTGGGNGT
GAACTATAGAAGGTTCTAAAAAATTCCCAGCCTGTTCATATTCAGAGTGA
GTCCTCTCTCCTCCATTACACCTTTCTGGAAACATCTGTATGGACATGCC
TAGCAATGTTTCCTGGGTGAATCTACATCTTGTTAAGCTGGCAGTGAAGA
TGAACCATCTCAGATGTCCTGGATCAAGACTCACGTTAGTGAACAGCCAA
TTTATCTGGGAAAGTGGTTGAAATGGGAACACGGGTGAGCTGACTCAGGA
TGCTCACTGTGCGAGTGTCTCNNCTACAGTTTGATGGCTAAAGGAAGCTC
CAAACTACTATGGGCTTAGGGAAGGGCATTTCCAATAAGCCATCTTATCT
TCAAGTGCCAGTAAAAACAATCGTGGGACAAATAGGTTTCTTGCCAAAGT
TCCTTGGTGTTTCCACAAATTCCAAGTTTGAATAACTGTATAAGCGAGGG
GCCCAGTAGTGTCTGCAAGAACGCTGCTTTGTGTTCTGAAACTCAGATTA
ACAGCTGATCCTCCAAATGAAAGCAATTTGTCCTCCAAATTAAAGCATCC
AAAATGCTCTGTCCCTTGATCTCAGGATTTGGATTATTAGCCTTCATTTA
GCTTATCAAAGCCTTGGCCATTGTGATGTGGTTCTTGTTTGTTTTTTGTT
TTTATTTCTTTGGTCTGAAATTCCCAAGATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k07.g1 MSMg01no502_k07.g1 CHROMAT_FILE:
MSMg01no502_k07.g1 PHD_FILE: MSMg01no502_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:44 2005
         (324 letters)



>mm_chr13_44419237_44419960
          Length = 724

 Score =  511 bits (264), Expect = e-149
 Identities = 302/324 (93%), Gaps = 15/324 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtttgatggctaaaggaagctccaaactactatgggcttagggaagggcatttccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cagtttgatggctaaaggaagctccaaactactatgggcttagggaagggcatttccaat 634

                                                                       
Query: 61  aagccatcttatcttcaagtgccagtaaaaacaatcgtgggacaaataggtttcttgcca 120
           |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 633 aagccatcttctcttcgagtgccagtaaaaataatcgtgggacaaataggtttcttgcta 574

                                                                       
Query: 121 aagttccttggtgtttccacaaattccaagtttgaataactgtataagcgaggggcccag 180
           | |||||||||||||||||||||||||||||||||||||| |||||| ||          
Sbjct: 573 aggttccttggtgtttccacaaattccaagtttgaataaccgtataatcg---------- 524

                                                                       
Query: 181 tagtgtctgcaagaacgctgctttgtgttctgaaactcagattaacagctgatcctccaa 240
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 -----tctgcaagaacgctgctttgtgttctgaaactcagattaacagctgatcctccaa 469

                                                                       
Query: 241 atgaaagcaatttgtcctccaaattaaagcatccaaaatgctctgtcccttgatctcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atgaaagcaatttgtcctccaaattaaagcatccaaaatgctctgtcccttgatctcagg 409

                                   
Query: 301 atttggattattagccttcattta 324
           ||||||||||||||||||||||||
Sbjct: 408 atttggattattagccttcattta 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)