BAC Information

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BAC

Clone NameMSMg01-502M06
Chromosome13 (Build37)
Map Location 83,940,142 - 83,940,318
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667018, Mef2c, LOC100043111, LOC623241
Downstream geneLOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111, LOC382786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502M06.T7 (MSMg01no502_m06.b1)MSMg01-502M06.TJ (MSMg01no502_m06.g1)
ACCAG578043AG578044
length740729
length of high quality
(start - end)
669 (72 - 740)181 (323 - 503)
definitionCHROMAT_FILE: MSMg01no502_m06.b1 PHD_FILE: MSMg01no502_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:53 2005CHROMAT_FILE: MSMg01no502_m06.g1 PHD_FILE: MSMg01no502_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTTGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTTCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCTTTGTGTCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTGTATCACAATTGCTC
TGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTA
TCCTTTAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCGCAAAAATCCTAAGCATTGCTGCTCAGGACAGGTGATT
GGCAGTAGCCAAATTACTTTAAAATCATAAACACTCTGTTTTCAAGAACA
TAGTGTGTATCTCAATAGGTACTGGCACTTTATTCTTCTTTCCTTTATCT
TGGGTGTGGTTTATCATGAGATACTACATAGTTATTAGAAAGTCTTATTA
AGTATGTTTCCACAATGTTGGTACTAGATGCTGATATTTCTTTGGAGGAT
TTGTAGTTATTTAGTTTTGTATATTAAGGTGCCCACAGTAGAGCACTTAC
CTAACATAAGAACCCAAGTTCAGTCCCCAGAACCTCACACCTACATAGAG
TTATTGACTAGAAAAGAAATCAATAAGTCATTTAAATGATACCAAAGGTA
GTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGT
ATGNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNTNNTNNNNTNTTNTT
TTNTTTTTTTNTTTTTTTNTTTTTTCTTTNTNNTTTNTNNTTTNTTTTTT
TTTTNTTTTTTTTNTTTTTTTTCTTTTTTNTTTTTTTTNNNNTTTTTTTT
TTTTTTTTTTTNNTNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTNNT
TTTTTTTTTTTNTTTTANTTTTTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_m06.g1 MSMg01no502_m06.g1 CHROMAT_FILE:
MSMg01no502_m06.g1 PHD_FILE: MSMg01no502_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:53 2005
         (181 letters)



>mm_chr13_83939939_83940519
          Length = 581

 Score =  311 bits (161), Expect = 1e-89
 Identities = 173/177 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaggtgcccacagtagagcacttacctaacataagaacccaagttcagtccccagaacct 63
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 aaggtgcccacagtagagcacttacctaacacaagaacccaagttcagtccccagaacct 263

                                                                       
Query: 64  cacacctacatagagttattgactagaaaagaaatcaataagtcatttaaatgataccaa 123
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 264 cacacctacatagagttattgactagaaaagaaatcaataaatcatttaaatgataccag 323

                                                                    
Query: 124 aggtagtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtat 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 324 aggtagtatgtatgtatgtatgtatgtatgtatgtatgcatgtatgtatgtatgtat 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)