Query= MSMg01no502_o22.b1 MSMg01no502_o22.b1 CHROMAT_FILE:
MSMg01no502_o22.b1 PHD_FILE: MSMg01no502_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
(501 letters)
>mm_chr13_3592527_3593427
Length = 901
Score = 922 bits (477), Expect = 0.0
Identities = 496/503 (98%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 1 ctacacagagaaaccctgtctcgaaaaaacaaacagagtaaaaaaaaccctgtgctagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctacacagagaaaccctgtctcgaaaaaacaaacagagtaaaaaaaaccctgtgctagta 258
Query: 61 cgttctcttggcttgcagttccaggccccatgcctgctgcctctactccagcaccatagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgttctcttggcttgcagttccaggccccatgcctgctgcctctactccagcaccatagg 318
Query: 121 tcctagagctctctggaattgtaagcccaaatagacaccttttttctatgttgtcttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcctagagctctctggaattgtaagcccaaatagacaccttttttctatgttgtcttagt 378
Query: 181 tacagtgctttatcataacaatagaaaagtcactaatatatgattaatatttttttttt- 239
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 379 tacagtgctttatcataacaatagaaaagtcactaatatatgattaatgttttttttttt 438
Query: 240 -gtcctcagggtcaataccatgttgggaatacatggtccaaacacaaagttgtagtacat 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtcctcagggtcaataccatgttgggaatacatggtccaaacacaaagttgtagtacat 498
Query: 299 agatagcaagagtagccatgaaaatcccgagtcatagctttttgagacactgtaaggaaa 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct: 499 agatagcaagagtagccatgaaaatccccagtcatagctttttgagacactgtgggggaa 558
Query: 359 aagtatgtcctagctactgttgattcaaatggatttaattttagatatgctgaatttttg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtatgtcctagctactgttgattcaaatggatttaattttagatatgctgaatttttg 618
Query: 419 gaagtttatattatgccaatgatatgtcagtatgtggagacacaggtctgaagcttagag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaagtttatattatgccaatgatatgtcagtatgtggagacacaggtctgaagcttagag 678
Query: 479 tccacttgcaaaggaggtcaact 501
|||||||||||||||||||||||
Sbjct: 679 tccacttgcaaaggaggtcaact 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_o22.g1 MSMg01no502_o22.g1 CHROMAT_FILE:
MSMg01no502_o22.g1 PHD_FILE: MSMg01no502_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
(558 letters)
>mm_chr13_3761906_3762863
Length = 958
Score = 1069 bits (553), Expect = 0.0
Identities = 553/553 (100%)
Strand = Plus / Minus
Query: 1 tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 494
Query: 61 cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 434
Query: 121 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 374
Query: 181 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 314
Query: 241 ctcttcctcctttccttcagccccattcattggatcatctttgagaagctcagctcccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcttcctcctttccttcagccccattcattggatcatctttgagaagctcagctcccta 254
Query: 301 gagagttccagctctgcactacaaattccccagtgccaaagcccactatttcctttctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagagttccagctctgcactacaaattccccagtgccaaagcccactatttcctttctgt 194
Query: 361 tgctgttgctgtgataaaatgttttcccaaaagcaactttaggaagaaagtgcttgctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgctgttgctgtgataaaatgttttcccaaaagcaactttaggaagaaagtgcttgctgt 134
Query: 421 agcttacagttcaaggatataatttatcaaggtggggaagtcaaggtggtgggagtttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agcttacagttcaaggatataatttatcaaggtggggaagtcaaggtggtgggagtttga 74
Query: 481 agcagctggtattgtgacatccacaacaagagaagcagaaagcaatgcatgcttctgctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 agcagctggtattgtgacatccacaacaagagaagcagaaagcaatgcatgcttctgctt 14
Query: 541 ggctcttctctac 553
|||||||||||||
Sbjct: 13 ggctcttctctac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|