BAC Information

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BAC

Clone NameMSMg01-502O22
Chromosome13 (Build37)
Map Location 3,592,725 - 3,762,458
singlet/doubletdoublet
Overlap geneAsb13
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502O22.T7 (MSMg01no502_o22.b1)MSMg01-502O22.TJ (MSMg01no502_o22.g1)
ACCAG578168AG578169
length797803
length of high quality
(start - end)
501 (60 - 560)558 (74 - 631)
definitionCHROMAT_FILE: MSMg01no502_o22.b1 PHD_FILE: MSMg01no502_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005CHROMAT_FILE: MSMg01no502_o22.g1 PHD_FILE: MSMg01no502_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,592,725 - 3,593,227)(3,761,906 - 3,762,458)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGA
CATTCTGGGCTACACAGAGAAACCCTGTCTCGAAAAAACAAACAGAGTAA
AAAAAACCCTGTGCTAGTACGTTCTCTTGGCTTGCAGTTCCAGGCCCCAT
GCCTGCTGCCTCTACTCCAGCACCATAGGTCCTAGAGCTCTCTGGAATTG
TAAGCCCAAATAGACACCTTTTTTCTATGTTGTCTTAGTTACAGTGCTTT
ATCATAACAATAGAAAAGTCACTAATATATGATTAATATTTTTTTTTTGT
CCTCAGGGTCAATACCATGTTGGGAATACATGGTCCAAACACAAAGTTGT
AGTACATAGATAGCAAGAGTAGCCATGAAAATCCCGAGTCATAGCTTTTT
GAGACACTGTAAGGAAAAAGTATGTCCTAGCTACTGTTGATTCAAATGGA
TTTAATTTTAGATATGCTGAATTTTTGGAAGTTTATATTATGCCAATGAT
ATGTCAGTATGTGGAGACACAGGTCTGAAGCTTAGAGTCCACTTGCAAAG
GAGGTCAACTAGGAAGGTTAAAGAAAGACAGTTGCTTGAGGAAAAAACAC
AGTTAACAAGTGCTCTGTGCTAGTAAGTTGTTGGGTAAGAAGATAAGGAC
TGGACAGTACGCAAACCCCCCAGGATGAGGGAACTGGGTAGTACTGTAAC
CTCCTCACCTGCTGTTTGCGGCGCATGAAATAAATGTAAACCTGTAGGCC
CTCCTGCTCGCTCCAAAACCTGTAGAAGCCGGAGAAAAAAGGAATGG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCGCAAATCTCTCCTGGGCCTTGAAAGCATCAACCC
TGCAAGTGATGAGCCCAAAGGGATATCCAGAGACTTAGCTCTGAAGGAAT
CACAGGCTACCCCAATGAAGCCAAAGTCTTGCAATGCTAAAGCTTGTTCA
TAAATCTGGTAGGCAGTGCTGGCCTTGAGGCAAACTTAGGAGTGGATAAA
GATTATTTAACTCTGGGGATCAAGGTTCCTAGTCCCCATGGGGCAGCCAT
CTGGTTTGAGGGGCTCTTCCTCCTTTCCTTCAGCCCCATTCATTGGATCA
TCTTTGAGAAGCTCAGCTCCCTAGAGAGTTCCAGCTCTGCACTACAAATT
CCCCAGTGCCAAAGCCCACTATTTCCTTTCTGTTGCTGTTGCTGTGATAA
AATGTTTTCCCAAAAGCAACTTTAGGAAGAAAGTGCTTGCTGTAGCTTAC
AGTTCAAGGATATAATTTATCAAGGTGGGGAAGTCAAGGTGGTGGGAGTT
TGAAGCAGCTGGTATTGTGACATCCACAACAAGAGAAGCAGAAAGCAATG
CATGCTTCTGCTTGGCTCTTCTCTACTTGTACATTTCAGGATCCCTGCCA
AGGGATGTGCCACCCATGGTGGGCTCATCTTTCCACCTCAATTAATCCAT
CAGGATTGGCTACCTTCTACTGCATCTGGCATGACCCTGAGCCCATCTCC
CAGTGATCTGAGATTTGTTGACGTTAACGTTACCATGCACTCCCCTCCAT
AGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_o22.b1 MSMg01no502_o22.b1 CHROMAT_FILE:
MSMg01no502_o22.b1 PHD_FILE: MSMg01no502_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
         (501 letters)



>mm_chr13_3592527_3593427
          Length = 901

 Score =  922 bits (477), Expect = 0.0
 Identities = 496/503 (98%), Gaps = 2/503 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacacagagaaaccctgtctcgaaaaaacaaacagagtaaaaaaaaccctgtgctagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctacacagagaaaccctgtctcgaaaaaacaaacagagtaaaaaaaaccctgtgctagta 258

                                                                       
Query: 61  cgttctcttggcttgcagttccaggccccatgcctgctgcctctactccagcaccatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cgttctcttggcttgcagttccaggccccatgcctgctgcctctactccagcaccatagg 318

                                                                       
Query: 121 tcctagagctctctggaattgtaagcccaaatagacaccttttttctatgttgtcttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcctagagctctctggaattgtaagcccaaatagacaccttttttctatgttgtcttagt 378

                                                                       
Query: 181 tacagtgctttatcataacaatagaaaagtcactaatatatgattaatatttttttttt- 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| 
Sbjct: 379 tacagtgctttatcataacaatagaaaagtcactaatatatgattaatgttttttttttt 438

                                                                       
Query: 240 -gtcctcagggtcaataccatgttgggaatacatggtccaaacacaaagttgtagtacat 298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtcctcagggtcaataccatgttgggaatacatggtccaaacacaaagttgtagtacat 498

                                                                       
Query: 299 agatagcaagagtagccatgaaaatcccgagtcatagctttttgagacactgtaaggaaa 358
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||
Sbjct: 499 agatagcaagagtagccatgaaaatccccagtcatagctttttgagacactgtgggggaa 558

                                                                       
Query: 359 aagtatgtcctagctactgttgattcaaatggatttaattttagatatgctgaatttttg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtatgtcctagctactgttgattcaaatggatttaattttagatatgctgaatttttg 618

                                                                       
Query: 419 gaagtttatattatgccaatgatatgtcagtatgtggagacacaggtctgaagcttagag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaagtttatattatgccaatgatatgtcagtatgtggagacacaggtctgaagcttagag 678

                                  
Query: 479 tccacttgcaaaggaggtcaact 501
           |||||||||||||||||||||||
Sbjct: 679 tccacttgcaaaggaggtcaact 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_o22.g1 MSMg01no502_o22.g1 CHROMAT_FILE:
MSMg01no502_o22.g1 PHD_FILE: MSMg01no502_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:05 2005
         (558 letters)



>mm_chr13_3761906_3762863
          Length = 958

 Score = 1069 bits (553), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tctcctgggccttgaaagcatcaaccctgcaagtgatgagcccaaagggatatccagaga 494

                                                                       
Query: 61  cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cttagctctgaaggaatcacaggctaccccaatgaagccaaagtcttgcaatgctaaagc 434

                                                                       
Query: 121 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgttcataaatctggtaggcagtgctggccttgaggcaaacttaggagtggataaagat 374

                                                                       
Query: 181 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatttaactctggggatcaaggttcctagtccccatggggcagccatctggtttgagggg 314

                                                                       
Query: 241 ctcttcctcctttccttcagccccattcattggatcatctttgagaagctcagctcccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcttcctcctttccttcagccccattcattggatcatctttgagaagctcagctcccta 254

                                                                       
Query: 301 gagagttccagctctgcactacaaattccccagtgccaaagcccactatttcctttctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagagttccagctctgcactacaaattccccagtgccaaagcccactatttcctttctgt 194

                                                                       
Query: 361 tgctgttgctgtgataaaatgttttcccaaaagcaactttaggaagaaagtgcttgctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgctgttgctgtgataaaatgttttcccaaaagcaactttaggaagaaagtgcttgctgt 134

                                                                       
Query: 421 agcttacagttcaaggatataatttatcaaggtggggaagtcaaggtggtgggagtttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agcttacagttcaaggatataatttatcaaggtggggaagtcaaggtggtgggagtttga 74

                                                                       
Query: 481 agcagctggtattgtgacatccacaacaagagaagcagaaagcaatgcatgcttctgctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  agcagctggtattgtgacatccacaacaagagaagcagaaagcaatgcatgcttctgctt 14

                        
Query: 541 ggctcttctctac 553
           |||||||||||||
Sbjct: 13  ggctcttctctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)