Query= MSMg01no503_h24.b1 MSMg01no503_h24.b1 CHROMAT_FILE:
MSMg01no503_h24.b1 PHD_FILE: MSMg01no503_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:47 2005
(516 letters)
>mm_chr13_93531963_93532885
Length = 923
Score = 949 bits (491), Expect = 0.0
Identities = 509/519 (98%), Gaps = 7/519 (1%)
Strand = Plus / Minus
Query: 5 ggaattcctttgttctctgacctccccaggagtaggacctccctccgtgtcattcactct 64
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ggaatccctttgtcctctgacctccccaggagtaggacctccctccgtgtcattcactct 664
Query: 65 gatctatgtctggtggcccagtaaccctagatgtttctggtacttatagccctaggagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gatctatgtctggtggcccagtaaccctagatgtttctggtacttatagccctaggagga 604
Query: 125 actctgtgagagtactgtctactaatgtcttgtcagagctgtgtctgtaaggcatctgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 603 actctgtgagagtactgtctactaatgtcttgtcagagctgtgtctgtaagacatctgcc 544
Query: 185 ttcctggctcctcccacac-------cctcaacatgggaactgagaactgagttttcagt 237
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 543 ttcctggctcctcccacaccctcactcctcaacatgggaactgagaactgagttttcagt 484
Query: 238 agagtcagacactacaccctgcctcctcctgaaagcaaggacaagaagatgtaccaaccc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agagtcagacactacaccctgcctcctcctgaaagcaaggacaagaagatgtaccaaccc 424
Query: 298 ctgcctgctctgggaagggctgggatgtcatggtgactgtactgcccatctctgggactc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgcctgctctgggaagggctgggatgtcatggtgactgtactgcccatctctgggactc 364
Query: 358 taccacagggactttcagggaggtccaggccaggagcagctctgaaagcctcatggagct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taccacagggactttcagggaggtccaggccaggagcagctctgaaagcctcatggagct 304
Query: 418 tgaggaaggacattttattcagtatggtgtccatagcgtatggcaactatcctaaaaaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgaggaaggacattttattcagtatggtgtccatagcgtatggcaactatcctaaaaaga 244
Query: 478 cagcctcgaatctgagtttctgaaaacataccacatcac 516
|||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cagcctcgaatctgagtttctgaaaacataccacatcac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 923
Length adjustment: 10
Effective length of query: 506
Effective length of database: 913
Effective search space: 461978
Effective search space used: 461978
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_h24.g1 MSMg01no503_h24.g1 CHROMAT_FILE:
MSMg01no503_h24.g1 PHD_FILE: MSMg01no503_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:47 2005
(407 letters)
>mm_chr13_93447634_93448438
Length = 805
Score = 712 bits (368), Expect = 0.0
Identities = 393/402 (97%), Gaps = 4/402 (0%)
Strand = Plus / Plus
Query: 1 ttagatcttgctcttctagtttctatgagctaatttatcactcatgccgagatgcccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagatcttgctcttctagtttctatgagctaatttatcactcatgccgagatgcccaga 260
Query: 61 gctttctcagcagtaggattccatctgaagctctagaaatttgatagaagcaaatgtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttctcagcagtaggattccatctgaagctctagaaatttgatagaagcaaatgtaag 320
Query: 121 actaattagctttgctaatatcacattttcatctctgaagtcatacagctatgtgactcc 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaattagctttggtaatagcacattttcatctctgaagtcatacagctatgtgactcc 380
Query: 181 catcttcccttccatttctgtgaggaccactcccacaaaatctttttttcccctaagttt 240
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 381 catcttcccttccatttctgtgaggaccactcccacaaa-t-tttttttcccctaagttt 438
Query: 241 ggatcatctagaacccgagtcagtgagaccaaaaaacttttctgtagccgtgttttatgt 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 439 ggatcatctagaacccgagtcagtgagaccaaaagacttttctgtagccgtgttttatgt 498
Query: 301 gcctgtgtgtttgcatatggcatatatgtatgtacatgttcacatgtgtatgcctgttgt 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 499 gcctgtgtgtttgcatatggcatatatgtatgtacatgttcacacatgtatgcctgttgt 558
Query: 361 atgtaggtgcttgtgtgtgtgtgtgtatgtatgtgtgtgtgt 402
|||||||||||||||||||||||| ||||||||||||||||
Sbjct: 559 atgtaggtgcttgtgtgtgtgtgt--atgtatgtgtgtgtgt 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 805
Length adjustment: 9
Effective length of query: 398
Effective length of database: 796
Effective search space: 316808
Effective search space used: 316808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
