Query= MSMg01no504_d12.b1 MSMg01no504_d12.b1 CHROMAT_FILE:
MSMg01no504_d12.b1 PHD_FILE: MSMg01no504_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:45 2005
(638 letters)
>mm_chr13_59215524_59216560
Length = 1037
Score = 1122 bits (580), Expect = 0.0
Identities = 611/622 (98%), Gaps = 5/622 (0%)
Strand = Plus / Minus
Query: 19 aatgaaattaagggctggagagatggctcaatgattaagaggatttaccactttccatgg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 aatgaaattaagggctggagagatggctcaatgattaagaggatttaccactttccatgg 800
Query: 79 gacccaggattggttcccagtgctcacatggaagctcacaaccatctgtcactccagttc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gacccaggattggttcccagtgctcacatggaagctcacaaccatctgtcactccagttc 740
Query: 139 caggggatctgatgccacctgctggccaactgtggggattgcacatatgtgcactttaga 198
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 739 caggggatctgatgccacctgctggccaactgtggggattgcacatatgtgcac-ttaga 681
Query: 199 ttccgtatacagtgttaagctccatctttaaatgttcaatgttcctaaacca-ttttctc 257
|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 ttcc--atatagtgttaagctccatctttaaatgttcaatgttcctaaaccacttttctc 623
Query: 258 cttcatgagcatttgtggtgaccaacccatgagaccaaatgatatttagtacaggacatt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cttcatgagcatttgtggtgaccaacccatgagaccaaatgatatttagtacaggacatt 563
Query: 318 ctcatggtgacaagccacagggatgggatagggttctgaggaaaggtaagaaaaactgca 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 562 ctcatggtgacaagccacagggatgggatagggttctgaggaaaggtaagaaaagctgca 503
Query: 378 gaggtatatacccgcagcgttctctgtgctaaagttactgtgttgtggtggtttggtgac 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaggtatatacccgcagcgttctctgtgctaaagttactgtgttgtggtggtttggtgac 443
Query: 438 aaattctggtgtgaagtattgctatggaaataatccagatggagcggcatcttggtcaag 497
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 442 aaattctggtgtgaagtattgctatagaaataatccagatggagcggcatctcagtcaag 383
Query: 498 gcttctattgctgtggtaaagcaccatgaccgaaagaatctcagggagagaatcaa-tgt 556
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 382 gcttctattgctgtggtaaagcaccatgaccgaaagaatctcagggagagaatcaagtgt 323
Query: 557 tctgtccttcagcttgtagttcatcacctgtggaaatcagtgtcgaactaactccaggca 616
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 tctgtccttcagcttgtagttcatcatctgtggaaatcagtgtcgaactaactccaggca 263
Query: 617 gaaagcaggaagcatcaactgg 638
||||||||||||||||||||||
Sbjct: 262 gaaagcaggaagcatcaactgg 241
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1037
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1027
Effective search space: 644956
Effective search space used: 644956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_d12.g1 MSMg01no504_d12.g1 CHROMAT_FILE:
MSMg01no504_d12.g1 PHD_FILE: MSMg01no504_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:46 2005
(531 letters)
>mm_chr13_59058436_59059366
Length = 931
Score = 973 bits (503), Expect = 0.0
Identities = 524/531 (98%)
Strand = Plus / Plus
Query: 1 ctcctttgtataatgaaaactgccgtgactgatatgaatggtgtccatcacgcttcatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcctttgtataatgaaaactgccgtgactgatatgaatggtgtccatcacgcttcatgg 260
Query: 61 taatatctgaatttctcactataatctgatgctacacatgtcattcctgtgacatcatga 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatctgaatttctcactataatctgatgctacacatgtcattcctgtgacatcatga 320
Query: 121 tctacacttgtgtggacaggacacacatgcgttcctgcaacaccctgaacgacacttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacacttgtgtggacaggacacacatgcgttcctgcaacaccctgaacgacacttgca 380
Query: 181 tgaagagaacacacatgcattcctgtgacatcctgctctccacttgtgtagaaggacaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagagaacacacatgcattcctgtgacatcctgctctccacttgtgtagaaggacaca 440
Query: 241 catttattcctttgacatcctgatctacacttgtgtggacaggacaagacataacatgga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggcattcctttgacatcctgatctacacttgtgtggacaggacaagacataacatgga 500
Query: 301 cagaagagattgtgatggttcatcttgcttgtcaatgtgacacagcagggaagaaggacc 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cagaagagattgtgatggttcatcttgcttgtcaatgtgacgcagcagggaagaaggacc 560
Query: 361 cttgtgggttaaaatggtgtcccgagtggcaggtcctgacgagaaaacacagtccatggt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cttgtgggttaaaatggtgtcccgagtggcaggtcctgacgagaaaacacagtccatgtt 620
Query: 421 tttttttttttttttttttttgaaatcactgtaactctttaatttagaaaacaatttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttttttttttttttttttgaaatcactgtaactctttaatttagaaaacaatttttg 680
Query: 481 aactgtagtgacattctgaatctacttaagacctttacaaatttcccgtgt 531
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 aactgtagtgacattctgaatctacttaagatctttacaaatttcccgtgt 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
