Query= MSMg01no504_h22.b1 MSMg01no504_h22.b1 CHROMAT_FILE:
MSMg01no504_h22.b1 PHD_FILE: MSMg01no504_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:07 2005
(559 letters)
>mm_chr13_57788023_57788981
Length = 959
Score = 878 bits (454), Expect = 0.0
Identities = 498/530 (93%), Gaps = 28/530 (5%)
Strand = Plus / Minus
Query: 56 actgtgctcagaaagcagaagacacaaaggagttcaaaacaagattgaaagcccgaagcc 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 actgtgctcagaaagcagaagacacaaaggagttcaaaacaagattgaaagcccgaagcc 900
Query: 116 tggccagtggagggctgggactgctagttccatgtggcctcttgtgtctcctagagattt 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 tggccagtggagggctgggactgctagttccatgtggcctcttgtgtctcctagagattt 840
Query: 176 agtgatgacttgtttagatctctctctctctctctctctctctctctctctctct----- 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 agtgatgacttgtttagatctctctctctctctctctctctctctctctctctctctctc 780
Query: 231 ---------------------cacacacacacacacactctctttccaagaactacaaga 269
||||||||||||||||| | | |||||||||||||||
Sbjct: 779 tctctctcacacacacacacacacacacacacacacacacac--accaagaactacaaga 722
Query: 270 tcatggtgctgctgttgggcctgagaagccgtagtgccccaggcattaggcagagcctgc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcatggtgctgctgttgggcctgagaagccgtagtgccccaggcattaggcagagcctgc 662
Query: 330 ttgagctggtgaacactggtggacaagctgagttttctggctacctcggcatcaaagggc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgagctggtgaacactggtggacaagctgagttttctggctacctcggcatcaaagggc 602
Query: 390 tagccggtgcctggccaggtagagccatgtgccattgccccagcagctcctgcttgcttc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tagccggtgcctggccaggtagagccatgtgccattgccccagcagctcctgcttgcttc 542
Query: 450 agagcaggctgagactgtcagaggaatcctttgtcaaggcagaaagactccagttaggtg 509
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 541 agagcaggctgagactgtcagaggaatcctttgtcaaggcagaaagaatccagttaggtg 482
Query: 510 gggaaaaatgctgctttagttttatttctgttgctgttatatatataaaa 559
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gggaaaaatgctgctttagttttatttctgttgctgttatatatataaaa 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_h22.g1 MSMg01no504_h22.g1 CHROMAT_FILE:
MSMg01no504_h22.g1 PHD_FILE: MSMg01no504_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:07 2005
(332 letters)
>mm_chr13_57660588_57661319
Length = 732
Score = 532 bits (275), Expect = e-155
Identities = 309/331 (93%), Gaps = 18/331 (5%)
Strand = Plus / Plus
Query: 1 tccttgtttgttttactgaagaggaaactggaaactccgagagaggcggaatcctgtctg 60
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tccttgtttgttttactgtagaggaaactggaaactccgagagaggcggggtcctgtctg 260
Query: 61 aagtcatggatttgattggtggtaaggtctagggccctcagagagtgtccaaggttgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcatggatttgattggtggtaaggtctagggccctcagagagtgtccaaggttgaag 320
Query: 121 ctttgccttggacagtgtcatagttactagtctattgctgccacaaaacaccatgaccaa 180
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgcctt-----------------ctagtctattgctgccacaaaacaccatgaccaa 363
Query: 181 ggtaacttataaaagaaggcatttaattgggcttacagtttgtggttttgatgagaatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ggtaacttataaaagaaggcatttaattgggcttacagtttgtggttttgatgagaatgc 423
Query: 241 tgccccaccatagactcatatgttcgaatgcttgatccccagttggtagaattgtttggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgccccaccatagactcatatgttcgaatgcttgatccccagttggtagaattgtttggg 483
Query: 301 aaggattaggatgtngtaggagggggagtgt 331
|||||||||||||| ||||||||||| ||||
Sbjct: 484 aaggattaggatgt-gtaggagggggggtgt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space: 233529
Effective search space used: 233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
