BAC Information

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BAC

Clone NameMSMg01-504O20
Chromosome13 (Build37)
Map Location 67,865,406 - 67,865,764
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
Downstream geneLOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504O20.T7 (MSMg01no504_o20.b1)MSMg01-504O20.TJ (MSMg01no504_o20.g1)
ACCAG579688AG579689
length756760
length of high quality
(start - end)		364 (51 - 414)514 (80 - 593)
definitionCHROMAT_FILE: MSMg01no504_o20.b1 PHD_FILE: MSMg01no504_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:42 2005CHROMAT_FILE: MSMg01no504_o20.g1 PHD_FILE: MSMg01no504_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCTTGCGAGAAACCCTACAAGGATGGGTATGGTGGGAA
AAGGTTTTATAGTTCTCCACACTTTCAAGGACATCAAAACACTCATACTG
GAGAGAAGCCATATCACTGTGAAGAATGTCACAAAACTTTTCGTAATCAC
TCAGCCCTTAGGAGACACACTGCAGTTCATACTGAAGAGAAACCCTACAA
GTGTAACCTTTATGGAAAAGGATTTACTAAGCTCTATGTCCTTAATGAAC
ACAAAATAGCTCATACTGGAGAAAAAAACATGCAAGTGTGAAGTGTGTGG
CAAATGTTTTTCCTATACTGCAGCCCTTAAAAGACACCNAATTCGGGCTG
GAGAGATGGCTCAGTGGNNAAAAGCACCGACTGCTCTTCCAAGGGTTGTG
AGTTCAAATCCCAGCAACCACATGATGGCTCACAACCATCCAATAATGAG
AGACAGCTACAGTGTACTTTACATATAATAAATACATGTTTTTTAAAAAA
GACACCAATTCATTCTTTCCGAATACAATCTCTACTAGTGTCGGGAACAT
GGGACAACCTTTTTCTCCTCTATGTTTTTTTTTTAACAATTATCCTTCTA
TTTTACGTTAGGTCGCTGGCGCGTTTTTTCTTTCTCCTCTTTTACGTCTG
TGTCATCCTGTTTTTTTATCCCCGCTTTGTTTCTCGAACATGAACACGAT
TCTGTC

NTTTTCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTGTTTAGAAAGTGATG
ATGGAGAACAGAAGGCCTTTCCACACACTTCACACTTGTATGGTTTCTCT
CCAGTATGCATTTTTGTATGGCTAAAAAGTCTTGATGGATAATGGAAGGC
CTTGTCACACACTTCACACTTGTAGGGTTTTTTTCCTGTATGAATAATCT
TGTGTTTAGAAAGTAGTGATGAATAATGGAAGGCCTTGCCACATACTTCA
CACTTGTAGGGTTTTTCTCCTGTATGAATTATCTTGTGATGAGAAAGTTT
TGATGGAACATGAAATGCCTGGTCACATATGTCACACTTATAGGGTTTTT
CTCCTGTATGAATTATCTTGTGTTTAGAAAGTAATGATGGATAATGGAAG
GCCTTGCCACAAACTTCACACTTGTAGGGTTTTTCTCCCGTATGAATTTT
CTTGTGTGCAGATAGTGATGATGGAAATCGGAAGGCCTTCCCACATTCTT
TACACTTGTATGGTTTCTCTCCTGTGTGAATTCTCTTGTGTTTAGATAGT
GATGGTGGAAAACAGAACGCCTTTCCACATACTTCACACTTGTATGGCTT
TTCTCCTGTATGAATTCTCTTATGCGTGGAAAGTCTTGATGGATAATAGA
AAGCCTTCCCCATACTTCACACTTATAGAGATTTTCTCTCGCATGAATTT
CCTGTGGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_o20.b1 MSMg01no504_o20.b1 CHROMAT_FILE:
MSMg01no504_o20.b1 PHD_FILE: MSMg01no504_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:42 2005
         (364 letters)



>mm_chr13_67865202_67865964
          Length = 763

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcttgcgagaaaccctacaaggatgggtatggtgggaaaaggttttatagtt 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattcattctggagagaaaccctacaaggatgggtatggtgggaaaaggttttatagtt 504

                                                                       
Query: 65  ctccacactttcaaggacatcaaaacactcatactggagagaagccatatcactgtgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctccacactttcaaggacatcaaaacactcatactggagagaagccatatcactgtgaag 444

                                                                       
Query: 125 aatgtcacaaaacttttcgtaatcactcagcccttaggagacacactgcagttcatactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatgtcacaaaacttttcgtaatcactcagcccttaggagacacactgcagttcatactg 384

                                                                       
Query: 185 aagagaaaccctacaagtgtaacctttatggaaaaggatttactaagctctatgtcctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagagaaaccctacaagtgtaacctttatggaaaaggatttactaagctctatgtcctta 324

                                                                       
Query: 245 atgaacacaaaatagctcatactggagaaaaaaacatgcaagtgtgaagtgtgtggcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaacacaaaatagctcatactggagaaaaaaacatgcaagtgtgaagtgtgtggcaaa 264

                                                                       
Query: 305 tgtttttcctatactgcagcccttaaaagacaccnaattcgggctggagagatggctcag 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 tgtttttcctatactgcagcccttaaaagacacc-aattcgggctggagagatggctcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space:   267670
Effective search space used:   267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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