Query= MSMg01no504_p22.b1 MSMg01no504_p22.b1 CHROMAT_FILE:
MSMg01no504_p22.b1 PHD_FILE: MSMg01no504_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:47 2005
(611 letters)
>mm_chr13_25776322_25777332
Length = 1011
Score = 1077 bits (557), Expect = 0.0
Identities = 596/609 (97%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcatttt-cacttgtaaccaatcccatttggctaattcagtcatgtcacaat 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcattttgca-ttgtaaccaatcccatttggctaattcagtcatgtcacaat 262
Query: 63 atcatgttccaaatcttctatgggacaggataaagcccccaatatttggactttccttat 122
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atcatgctccaaatcttctatgggacaggataaagcccccaatatttggactttccttat 322
Query: 123 ctgtgcaagtctttcctctgagggaaagataaggccattgaactctaaagagccctttgc 182
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 323 ctgtgcaagtcttccctctgagggcaagataagggcattgaactctaaagagccctttgc 382
Query: 183 ctcagtttcccactccatatgcctcagattagagtccacacctgactcagttggaagtgt 242
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 383 ctcagtttcccactccatatgcctcaaattagagttcacacctgactcagttggaattgt 442
Query: 243 gaaggctttcactagctctgttcacggaaattgctaaaagaagatgaagcaaatgtctct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaaggctttcactagctctgttcacggaaattgctaaaagaagatgaagcaaatgtctct 502
Query: 303 gatggtgagctgctgtgcctgccatctctcaaatgtttcttacatttcttcctcaggctt 362
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 503 gatggtgagctgctgtgcctgccatctctcaagtgtttcttacatttcttcctcaggctt 562
Query: 363 tcctcaggttctcctttttgactcacttcttgaggttcaggctgaagatctgtctcatta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcctcaggttctcctttttgactcacttcttgaggttcaggctgaagatctgtctcatta 622
Query: 423 tgctctcttaatgaacagaattcttggtttgcttttgttttagacagggcattatgtgtc 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgctctctcaatgaacagaattcttggtttgcttttgttttagacagggcattatgtgtc 682
Query: 483 tcaggtttacctggaattcacaatataacaggatgattttgaatttctcatccctctgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcaggtttacctggaattcacaatataacaggatgattttgaatttctcatccctctgtg 742
Query: 543 tctacctcctaaatgctgggattataagcatggatcaccacattcagtttatgcagtgct 602
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 743 tctacctcctaaatgctgggattgtaagcatggatcaccacatttagtttatgcagtgct 802
Query: 603 ggggtgaaa 611
|||||||||
Sbjct: 803 ggggtgaaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_p22.g1 MSMg01no504_p22.g1 CHROMAT_FILE:
MSMg01no504_p22.g1 PHD_FILE: MSMg01no504_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:48 2005
(561 letters)
>mm_chr13_25936130_25937090
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Minus
Query: 1 ttcattcagtgagagacttatggtagttaggtctctaagaaaccgattcccattgcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttcattcagtgagagacttatggtagttaggtctctaagaaaccgattcccattgcacaa 702
Query: 61 ataaacacattttttaaggtacctggaagctcttccctacatcctacaacttctcctaat 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ataaacacattttttaaggtatctggaagctcttccctacatcctacaacttctcctaat 642
Query: 121 ccaagccatttcgatcattaatctttagttaaagcaaaaagatttgccacagggaagcgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccaagccatttcgatcattaatctttagttaaagcaaaaagatttgccacagggaagcgc 582
Query: 181 taaactggatttgaaatgaaagattaatgacataggactttaaacatttcacagtccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 taaactggatttgaaatgaaagattaatgacataggactttaaacatttcacagtccata 522
Query: 241 tgactcaataaaagtggaacgctggagagcttacagggcctgaggattctgggggtatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgactcaataaaagtggaacgctggagagcttacagggcctgaggattctgggggtatga 462
Query: 301 aacaatcattattagtcattgacaaagatgtctctcaacacagaagcattagaggctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aacaatcattattagtcattgacaaagatgtctctcaacacagaagcattagaggctctg 402
Query: 361 ttacatggtcagtagaaaagacttttcttctgtcatgcagaccacatgtggctgtggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttacatggtcagtagaaaagacttttcttctgtcatgcagaccacatgtggctgtggaaa 342
Query: 421 taagttaccacccagatggacatttcacagagaatgaacagctgtcatgaggaaaaggag 480
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 341 taagttaccacccagatggacatttcacagagaatgaacagctctcatgaggaaaaggag 282
Query: 481 ttgtataaaacttcatcttttatcaaatgaattcccctaacactaggagatttgtacatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgtataaaacttcatcttttatcaaatgaattcccctaacactaggagatttgtacatc 222
Query: 541 caccttaacctattcacagat 561
|||||||||||||||||||||
Sbjct: 221 caccttaacctattcacagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
