BAC Information

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BAC

Clone NameMSMg01-505A17
Chromosome13 (Build37)
Map Location 96,029,934 - 96,030,608
singlet/doubletsinglet
Overlap genenone
Upstream geneScamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
Downstream geneZbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505A17.T7 (MSMg01no505_a17.b1)MSMg01-505A17.TJ (MSMg01no505_a17.g1)
ACCAG579778AG579779
length769817
length of high quality
(start - end)		688 (71 - 758)76 (73 - 148)
definitionCHROMAT_FILE: MSMg01no505_a17.b1 PHD_FILE: MSMg01no505_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:51 2005CHROMAT_FILE: MSMg01no505_a17.g1 PHD_FILE: MSMg01no505_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCAGTGCCCCTGATGTTAGACATTGACTATGGAATGTTCCACGG
TCCAGTTTTATTGCTGGAGAGCAGCCTATTCCAGGCCATTTTTGTTTATT
TTAAAGCAGAGTAACACTATGTAACCCTACCCAGACTGGAACTCACTGTG
TGGCACAGGTTGGTCTCAAATTTGCAATCATCCTGCCTTAGTCTTCTGGG
TGTAGGAATAGACACTATCCCTGGCTATTCCTTGTTAGTTTTACTTCGGT
TCTTAGAGAAAAGTGACAAAGAAATGAAAACCAACCTCAAGCCAAGTGTG
TGTGTGCCCTCAACAAAATGCAGACTGTTTTGCTAGTGTGATTGGAAACC
TTTAAACCCAAGCACAAAAATCAAAACCAAGGGCAAATGAAGGTCAGGGC
AGTGGAAGTCATTGATACCCACTTTTAAATACCAGAGAAGATTTCAGGCC
ATTGGAGCTGGCATGGTGCCACCTCACAGGGTGGGGTGTCTTTGTCTGCT
TGCTTTAAAGCCTCAGACCCTGTTGGCTCACTGACTGGGAAGGTCCTGGG
CCTCTCTTATCAGATCTCTGTATCAGAAGCCCGAACAACAAACATCTTCA
CAACCGGGTACAAGGAAGTCCAAGCTCCCCAGGGTCAGAGGCTGAAAAGC
ACAGTTAGCAAGCTAGCCTTGGAGGCCTTGTTGACAGAGCAAAGGGTGTG
TGGAGGAGGACACAGGCTG

CCATGACAANNNNAANNCCGGNNGGCCGCCTGTTCAAAAACAGGGAGGNG
ACACNANANAATTACCCACAAAATTCATGCACACAGGNAGGAGGGAAGGC
CTGCTGNGACCTACCCTCTGCTCANAATGTCTCCATGAGACTGGACCAAG
GCGAGCTATCTCACTGAGGGCACCATGGCTTTCCTTTTTTTTTTTTTTTT
CCTTTTCCTTNCCCNNNNNNNNNNNNNNNNNTTTTAGTTTACGGNNNNAA
NTTCTTGTTCTTGCTNNNNNNNNNNGGGGGGCCTGCTTTGTGGTGTTTTG
TGTTTGTGTCTGTTTGTGGTTGGGTGCTGGGGGGGGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAANAA
ANAAAATTGTGTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_a17.b1 MSMg01no505_a17.b1 CHROMAT_FILE:
MSMg01no505_a17.b1 PHD_FILE: MSMg01no505_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:51 2005
         (688 letters)



>mm_chr13_96029734_96030821
          Length = 1088

 Score = 1261 bits (652), Expect = 0.0
 Identities = 673/688 (97%), Gaps = 13/688 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttagacattgactatggaatgttccacggtccagttttattgctggagagcagcctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttagacattgactatggaatgttccacggtccagttttattgctggagagcagcctatt 260

                                                                       
Query: 61  ccaggccatttttgtttattttaaagcagagtaacactatgtaaccctacccagactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggccatttttgtttattttaaagcagagtaacactatgtaaccctacccagactgga 320

                                                                       
Query: 121 actcactgtgtggcacaggttggtctcaaatttgcaatcatcctgccttagtcttctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcactgtgtggcacaggttggtctcaaatttgcaatcatcctgccttagtcttctggg 380

                                                                       
Query: 181 tgtaggaatagacactatccctggctattccttgttagttttacttcggttcttagagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaggaatagacactatccctggctattccttgttagttttacttcggttcttagagaa 440

                                                                       
Query: 241 aagtgacaaagaaatgaaaaccaacctcaagccaagtgtgtgtgtgccctcaacaaaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgacaaagaaatgaaaaccaacctcaagccaagtgtgtgtgtgccctcaacaaaatg 500

                                                                       
Query: 301 cagactgttttgctagtgtgattggaaacctttaaacccaagcacaaaaatcaaaaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagactgttttgctagtgtgattggaaacctttaaacccaagcacaaaaatcaaaaccaa 560

                                                                       
Query: 361 gggcaaatgaaggtcagggcagtggaagtcattgatacccacttttaaataccagagaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcaaatgaaggtcagggcagtggaagtcattgatacccacttttaaataccagagaag 620

                                                                       
Query: 421 atttcaggccattggagctggcatggtgccacctcacagggtggggtgtctttgtctgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcaggccattggagctggcatggtgccacctcacagggtggggtgtctttgtctgct 680

                                                                       
Query: 481 tgctttaaagcctcagaccctgttggctcactgactgggaaggtcctgggcctctcttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctttaaagcctcagaccctgttggctcactgactgggaaggtcctgggcctctcttat 740

                                                                       
Query: 541 cagatctctgtatcagaagcccgaacaacaaacatcttcacaaccgggtacaaggaagtc 600
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagatctctgtatcagaagcctgaacaacaaacatcttcacaaccgggtacaaggaagtc 800

                                                                       
Query: 601 caagctccccagggtcagaggctgaaaagcacagttagcaagctagccttggaggccttg 660
           |||||||||||||||||||||||             ||||||||||||||||||||||||
Sbjct: 801 caagctccccagggtcagaggct-------------agcaagctagccttggaggccttg 847

                                       
Query: 661 ttgacagagcaaagggtgtgtggaggag 688
           ||||||||||| ||||||||||||||||
Sbjct: 848 ttgacagagcagagggtgtgtggaggag 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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