NNAAACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGCCTATACAAACAGGAAGCAGCAAGCATTGGTAAGATTTG
GGTGGTATTACCTGGAACATCTTGAAGGTAGAGTGACTGAGGATCTTCCC
CGTGCTCAGCTTCAATCTTGCCACCAATACAGGGCTCCCGGGTGCTTTAA
GATTGGCCCCTTTTCCATCAGTATACAAAACACAGATGCCCTTGTGTGGT
GTGAAGCTGCCACAGGCTGGTGACTGATTTTGGCTTTGAACACTATGCAC
ATTAGCTACAGGGAGACGTGGATGGATGTTTGTTAAGGACAACCAGACAG
GGTGGTCTGAGTGATAGGACCAGACATCCAAGAACACCAGGTCTTGACTA
ACATGGGTGTTGGTGGCTTCACCTTGCCAATGTGTGCGATCCAGACGTCA
CCATCTGTCCCCATGGAACCCTTCAGAGCAAGAGAGGAAGGACCCAACGA
ACAGTGTCCTGATTACAGTCACAGTTCCCTGTTCCCAAGCATGACACACG
GAGCGGTTCAGCATTTGAGAAAGGTCTTGTATCTAAAGCGATTCAGCCCA
GGTCTCCTTGCCCTTGTTTGGTGTTCAGGACGTGGGTAAGCTGATAATGT
TTACACAGGAGGAGATAAACAGACAGAAAAATAGCCTTTCTTCACTTGTA
TAATGATAGCTCTCACTGGGGGTTTTTTGGTTTTTGTTTTTTGTTTTTGT
TTTGGGAGGGCTGC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCAAAA
GGCTGAGAAGCACCTGAGAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATCGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGTAAGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCTTATAATTGGACATAGTACTACCGGAG
GATCCTGCAATACCTCTCCTGAGCATATATCCAGAAGATGCCCCAACCGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACGGAGGAATGGATACAG
AAAATGTGGTACATTTACACCATGGAGTACTACTCAGCTATTAAAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTAGAGGGCATCATCC
TGAGTGAGGTAACCCAATCACAAAAGAACTCAAATGAAATGTCCTCACTG
ATAAGTGGATATTAGCCCAGAAACTTAGTATAGTGAGATATAAGGTACAA
TATGTAAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACAC
TTTGCTCCTTCTTAGAAATGAG

Query= MSMg01no505_k18.b1 MSMg01no505_k18.b1 CHROMAT_FILE:
MSMg01no505_k18.b1 PHD_FILE: MSMg01no505_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:38 2005
         (644 letters)



>mm_chr13_69596430_69597474
          Length = 1045

 Score = 1222 bits (632), Expect = 0.0
 Identities = 639/642 (99%), Gaps = 3/642 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcctatac--aaacaggaagcagcaagcattggtaagatttgggtggtattac 62
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 gaattcagccta-acaaaaacaggaagcagcaagcattggtaagatttgggtggtattac 787

                                                                       
Query: 63  ctggaacatcttgaaggtagagtgactgaggatcttccccgtgctcagcttcaatcttgc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ctggaacatcttgaaggtagagtgactgaggatcttccccgtgctcagcttcaatcttgc 727

                                                                       
Query: 123 caccaatacagggctcccgggtgctttaagattggccccttttccatcagtatacaaaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 caccaatacagggctcccgggtgctttaagattggccccttttccatcagtatacaaaac 667

                                                                       
Query: 183 acagatgcccttgtgtggtgtgaagctgccacaggctggtgactgattttggctttgaac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acagatgcccttgtgtggtgtgaagctgccacaggctggtgactgattttggctttgaac 607

                                                                       
Query: 243 actatgcacattagctacagggagacgtggatggatgtttgttaaggacaaccagacagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 actatgcacattagctacagggagacgtggatggatgtttgttaaggacaaccagacagg 547

                                                                       
Query: 303 gtggtctgagtgataggaccagacatccaagaacaccaggtcttgactaacatgggtgtt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtggtctgagtgataggaccagacatccaagaacaccaggtcttgactaacatgggtgtt 487

                                                                       
Query: 363 ggtggcttcaccttgccaatgtgtgcgatccagacgtcaccatctgtccccatggaaccc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggtggcttcaccttgccaatgtgtgcgatccagacgtcaccatctgtccccatggaaccc 427

                                                                       
Query: 423 ttcagagcaagagaggaaggacccaacgaacagtgtcctgattacagtcacagttccctg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcagagcaagagaggaaggacccaacgaacagtgtcctgattacagtcacagttccctg 367

                                                                       
Query: 483 ttcccaagcatgacacacggagcggttcagcatttgagaaaggtcttgtatctaaagcga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcccaagcatgacacacggagcggttcagcatttgagaaaggtcttgtatctaaagcga 307

                                                                       
Query: 543 ttcagcccaggtctccttgcccttgtttggtgttcaggacgtgggtaagctgataatgtt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttcagcccaggtctccttgcccttgtttggtgttcaggacgtgggtaagctgataatgtt 247

                                                     
Query: 603 tacacaggaggagataaacagacagaaaaatagcctttcttc 644
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tacacaggaggagataaacagacagaaaaatagcctttcttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space:   656190
Effective search space used:   656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)