NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACCTTCCCTGAGGATCTGTATTAAAGGATCCAGCGTTAG
GAAGGTCGACAATGACTGCTCTCAAAATACTAACCCAAGGATCCTGGCCA
GGGATTAACATGACTGTTGCTAGAAGGGTTATGTTATAGAGTCACTGAGC
AAAGGAAGCTAATGAAATTAGCTTGCTGATTTTCTCTACTGGTTGCTTTT
TGACATATTCCTGTAGTGAGTTTGTTTGTAAAACAACACATTTTAACCAG
TAATGCTTTCTACTTTACTCTTTGGAAGGCTTTTCAAATGAAGCACTGCT
TTTTTTTTTAAACAGGAATGAACCCGAAAAGAAAGCATGCCAGGATGAAT
TACAATTACTTCCTTCAAACACTACCTTTTGATATATTATCTTTTGGTTT
GGAGAAAAGAAAAGCATCACATGGGCAATTATGGTAATTCTCTACATTTC
TTCAAAAGGATATTTACAGAATTAATAGAAAAACCTAATATGAAAATATT
CTTCTCTCATTCAAAGAAAAAGCTACATTGCTATTACCCCAGAAGGAGGC
ACAGGAAGCAATAGGAAACCAGGCACTAAATAGAGATCATCTGGACTCTA
GTATTGGCAAAGATTGACTTAAATAGACATGCCTGTTGTAGGAACTTAGC
CCTTGCCAAACCACACTTCTGGAAAACAAATCCTGTTGCTGGGCCT

NNNCCCGATGATAATGNGAGGCCTGGNGGCCGCCTTTCAAACAAAGGTAG
GTGACACTATAGATTCCACCACGAGAATCAATTCCCAGTACCCATGTGAC
TAAGAGAACCAACTCCTACTGCAAATTGTCCTCTGACCTCCACATGTACA
ATGTGGCATTTGTGTGCCCCACAAAATAAATAAATATAGTAACAACAACA
ACAGCATCATCATCATCATCAAAAAGCCATGTCTGCCATCATTAAGCACT
AGATGTGACCGTCTGAGAGAGAAACTTTAAGGAAGATGGGCTCTACTCTT
TGGTAAAACATAGGGAACATTTTTACAAACAGGAAAAGGCCTGGAAAGAA
ATAGAAATGCTATGTTACAAGGAAAATGTTTACAACAAAGTAAAGAACAG
TAATAAGGCAATTAATTTTTCTCTCATAAAAAATGATGGAAGACAAGTGT
CAGGATATAAATAATGCAAATCTGCATCTTAAGGGCTTCTCATCTGCTCT
TTCAAAGTGCCATCTCACCCTCCAGCGAGTAAAAAGGTAGCTGAAGCTTC
ACACTGCTCTAGCCCAGGAAAAATAAGAGGCAAGAGAGTACTGCTTTTCC
CAACAGAAACACAGGGCAGTCACTAACCCTGTGGCATGGTGCCAGCAAAA
ACTACCTTCTTATTAAGAAAGGAAAGACGGTTGTATAATGGGAGGCAAAC
TGCAGCATCAAGCCTGGCTCAAGACAAAGCAAGTGTTGCAACAATTAGAT
ACA

Query= MSMg01no505_o17.b1 MSMg01no505_o17.b1 CHROMAT_FILE:
MSMg01no505_o17.b1 PHD_FILE: MSMg01no505_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:56 2005
         (616 letters)



>mm_chr13_109067046_109068065
          Length = 1020

 Score =  874 bits (452), Expect = 0.0
 Identities = 500/526 (95%), Gaps = 21/526 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtattaaaggatccagcgttaggaaggtcgacaatgactgctctcaaaatactaaccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 525 ctgtattaaaggatccagcgttaggaaggtcgacaatgactgctctcaaagtactaaccc 466

                                                                       
Query: 61  aaggatcctggccagggattaacatgactgttgctagaagggttatgttata-gagtcac 119
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 465 aaggatcctggccagggattaacatgactgttgctagaagggttatgtta-acgagtcac 407

                                                                       
Query: 120 tgagcaaaggaagct----aatgaaattagcttgctgattttctctactggttgcttttt 175
           |||||||||||||||    ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 406 tgagcaaaggaagctgccaaatgaaattagcttgctgattttctctaccggttgcttttt 347

                                                                       
Query: 176 gacatattcctgtagtgagtttgtttgtaaaacaacacattttaaccagtaatgctttct 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacatattcctgtagtgagtttgtttgtaaaacaacacattttaaccagtaatgctttct 287

                                                                       
Query: 236 actttactctttggaaggcttttcaaatgaagcactgctttttt----tt-ttaa----- 285
           ||||||||||||||||||||||||||||||||||||||||||||    || ||||     
Sbjct: 286 actttactctttggaaggcttttcaaatgaagcactgcttttttattattattaattttt 227

                                                                       
Query: 286 -----acaggaatgaacccgaaaagaaagcatgccaggatgaattacaattacttccttc 340
                |||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tttttacaaaaatgaacccgaaaagaaagcatgccaggatgaattacaattacttccttc 167

                                                                       
Query: 341 aaacactaccttttgatatattatcttttggtttggagaaaagaaaagcatcacatgggc 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 aaacactaccttttgatatattatcttttggtttggagaaaagaaaagcatcacatgggc 107

                                                                       
Query: 401 aattatggtaattctctacatttcttcaaaaggatatttacagaattaatagaaaaacct 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 aattatggtaattctctacatttcttcaaaaggatatttacagaattaatagaaaaacct 47

                                                         
Query: 461 aatatgaaaatattcttctctcattcaaagaaaaagctacattgct 506
           |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 46  aatatgaaaatattcttctctcattcaaagaaaaagctacgttgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1020
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1010
Effective search space:   612060
Effective search space used:   612060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_o17.g1 MSMg01no505_o17.g1 CHROMAT_FILE:
MSMg01no505_o17.g1 PHD_FILE: MSMg01no505_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:56 2005
         (379 letters)



>mm_chr13_108921908_108922686
          Length = 779

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaggaaaaggcctggaaagaaatagaaatgctatgttacaaggaaaatgtttacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacaggaaaaggcctggaaagaaatagaaatgctatgttacaaggaaaatgtttacaac 260

                                                                       
Query: 61  aaagtaaagaacagtaataaggcaattaatttttctctcataaaaaatgatggaagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtaaagaacagtaataaggcaattaatttttctctcataaaaaatgatggaagacaa 320

                                                                       
Query: 121 gtgtcaggatataaataatgcaaatctgcatcttaagggcttctcatctgctctttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtcaggatataaataatgcaaatctgcatcttaagggcttctcatctgctctttcaaa 380

                                                                       
Query: 181 gtgccatctcaccctccagcgagtaaaaaggtagctgaagcttcacactgctctagccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccatctcaccctccagcgagtaaaaaggtagctgaagcttcacactgctctagccca 440

                                                                       
Query: 241 ggaaaaataagaggcaagagagtactgcttttcccaacagaaacacagggcagtcactaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaataagaggcaagagagtactgcttttcccaacagaaacacagggcagtcactaa 500

                                                                       
Query: 301 ccctgtggcatggtgccagcaaaaactaccttcttattaagaaaggaaagacggttgtat 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ccctgtggcatggtgccagcaaaaactaccttcttagtaagaaaggaaagacggttgtat 560

                              
Query: 361 aatgggaggcaaactgcag 379
           |||||||||||||||||||
Sbjct: 561 aatgggaggcaaactgcag 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)