Query= MSMg01no506_h08.b1 MSMg01no506_h08.b1 CHROMAT_FILE:
MSMg01no506_h08.b1 PHD_FILE: MSMg01no506_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:40 2005
(438 letters)
>mm_chr13_73254360_73255196
Length = 837
Score = 816 bits (422), Expect = 0.0
Identities = 431/436 (98%), Gaps = 5/436 (1%)
Strand = Plus / Minus
Query: 5 gaattcatcccagtatc--atggccactttaacactcagttagcctttagataattgagc 62
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaattcatcccag---cagatggccactttaacactcagttagcctttagataattgagc 581
Query: 63 gttgactccggaatcataaaatggatggctcgtttgtacgttttactgaaatagatcgcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gttgactccggaatcataaaatggatggctcgtttgtacgttttactgaaatagatcgcc 521
Query: 123 gaggttaaataaatgaaatcccatttgtcaggcagtaataaatgggttccccttctgcaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaggttaaataaatgaaatcccatttgtcaggcagtaataaatgggttccccttctgcaa 461
Query: 183 acagctctgtttggcctaataaatacagggacgttacagcgctcctcccgcgatggggtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acagctctgtttggcctaataaatacagggacgttacagcgctcctcccgcgatggggtt 401
Query: 243 acggcttaatgaaatggtcttccctctgcttgtttttgcctcctcctgcaccgtgtgata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acggcttaatgaaatggtcttccctctgcttgtttttgcctcctcctgcaccgtgtgata 341
Query: 303 agtagcaaaccaacgaagcttgtaattacaatcttacagaaacccggccaatctgtatat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agtagcaaaccaacgaagcttgtaattacaatcttacagaaacccggccaatctgtatat 281
Query: 363 aaatctcaccctccaattacaagatgtaataattttgcagtcaagctggtaatgaggtct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaatctcaccctccaattacaagatgtaataattttgcagtcaagctggtaatgaggtct 221
Query: 423 aatactcatgcctgcg 438
||||||||||||||||
Sbjct: 220 aatactcatgcctgcg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_h08.g1 MSMg01no506_h08.g1 CHROMAT_FILE:
MSMg01no506_h08.g1 PHD_FILE: MSMg01no506_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:40 2005
(584 letters)
>mm_chr13_73118296_73119273
Length = 978
Score = 1021 bits (528), Expect = 0.0
Identities = 568/584 (97%), Gaps = 6/584 (1%)
Strand = Plus / Plus
Query: 1 aacaggtacctgagcaacatcttgaggcatctcctacgccttgaaatagaacccttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaggtacctgagcaacatcttgaggcatctcctacgccttgaaatagaacccttcctg 260
Query: 61 tatcccaggtgaagacaccacagggtgaagacagtcacacaagaggatctaactctaaag 120
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 261 tatcccaggtgaagacaccacaggatgaagacagtcacacaagaggctctaactctaaag 320
Query: 121 taaggttgctctctggaataaatttttcttttatcctaaccaacttaaaaaaaaaacacg 180
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 321 taaggttgctctctggaataaatttttcttttatcttaaccaactt-aaaaaaaaacact 379
Query: 181 taaaaattgacttttttttcttatcatataggatgtctttgttcaaaagccaaattggga 240
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 taaaaatggacttttttttcttatcatataggacgtctttgttcaaaagccaaattggga 439
Query: 241 ccagtatcccactttggggtcagtatgctggagggatgtgaaacaaagttgatataaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccagtatcccactttggggtcagtatgctggagggatgtgaaacaaagttgatataaatt 499
Query: 301 aaattagtaactgaatatcaagtaaaacctttgcccccttgggattctctagtattttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaattagtaactgaatatcaagtaaaacctttgcccccttgggattctctagtattttcc 559
Query: 361 ctttaaagtgctacccaaatgtacaggtatgaataattttcatttttacaaaaactatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctttaaagtgctacccaaatgtacaggtatgaataattttcatttttacaaaaactatta 619
Query: 421 atggtaaagatatttaagcaatcacacaaaagagtaacaaattcatgtgtgagtagtgga 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 620 atggtaaagatatttaagcaatcacacaaaagagtgacaaattcatgtgtgagtagtgga 679
Query: 481 gagaccaataatgcttgctgatatgagaggctgctgaaaggacatggcccccacaggagt 540
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagaccaatcatgcttgctgatatgagaggctgctgaaaggacatggcccccacaggag- 738
Query: 541 gaggcacttgtagtgggcctcaggtgaagggcagcccctgtgag 584
||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 739 ----cacttgtagtgggcctcgggtgatgggcagcccctgtgag 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 978
Length adjustment: 10
Effective length of query: 574
Effective length of database: 968
Effective search space: 555632
Effective search space used: 555632
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
