BAC Information

Click to search

BAC

Clone NameMSMg01-507H03
Chromosome13 (Build37)
Map Location 56,355,516 - 56,514,045
singlet/doubletdoublet
Overlap geneCxcl14
Upstream geneNsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1
Downstream geneLOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507H03.T7 (MSMg01no507_h03.b1)MSMg01-507H03.TJ (MSMg01no507_h03.g1)
ACCAG581593AG581594
length738772
length of high quality
(start - end)		643 (28 - 670)650 (71 - 720)
definitionCHROMAT_FILE: MSMg01no507_h03.b1 PHD_FILE: MSMg01no507_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:00 2005CHROMAT_FILE: MSMg01no507_h03.g1 PHD_FILE: MSMg01no507_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,513,408 - 56,514,045)(56,355,516 - 56,356,194)
sequence
GCTATACGACTCACTATAGTTCGAGGATCCGCGGAATTCAGAGCATGGTT
ACCTCATCTTTCTTGGACTGCGTCCAGGTTAATCTTCATCTTCCCAGAAC
CTTGGCATCTTCCCTGCCGGTGAGCATGGCTGTCAGCAGCATGCCTGGGG
CACATGAGGCTTCTTGCAGCCCTCTTCCTTCCCACCTTTTCGTTCCTCCA
CCTGTCACCCCTGCCTTCCCTCACTCATTCCTGAAGCCAAGATCTATCTG
ATTACGCTCTCACATCCAGCTAATGTCTTCCAAGCAACGGTTGAGCCTTT
TCACAAATCATTCTCTGGTGGGCCCGCATAGGGTGCCAAATAGAAGACGA
CACCCTCTGCCTTCCTCTGCCATCTGTCCTTAAAAGCATTCTTCCTGTCT
TCAGCATCATTTATACCCAGCCATGCTCTGGAACACAAGAAAATGGGTAA
GCCAACATCAGAGGTAGGAACTGAGCCCAGAGAATGTGCAGTATGGCCTC
TCTAGCCCTCTGCACTTGCCTCCTCTCCCATCGTTAAGTGAGCATTCTCA
TGGCTGGCTTGTGTTTCTCCTTCCCTTGTGTTTCTTGCTGCAATCCTGGA
GCAAAGGATTATAGAGGAATCATGGAAGCCAGACCCTTCATGACTGTACT
GGGACTTGTCTATGTACAGGACAGGGAGATGAATGTCAAGTGCTTGGTGC
CAGGGCATCACACCCTTGTGAGTGTCCCACTGCTTTTC

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCGAATTCACTCCCGGCTCTGACAATTAGACCAGGC
AATTTAAAGTTCATTCAAACTGAACACTGACTCTGAGCTGGTGACATTTT
AAAGGTCACTTGAATCATGGTGACAAGCTGGAAGAGCCATTCATTGGTCA
CTGGTAAAAGAGGTGGCCAGGAGGTGGTGGATGTCCAGCCAGTCTGCTGA
GTGGAGCTACTGGGCTCCATTTGCCAGGTGTGTGTCTGTGGCTTAGCAAG
GGAAGCAGGTCCATGTGGAGGTCCATGTGGAGGTGGGTGGCTTGCTCTGG
GCTGGCTGTCTATTAAGTCTGGGGTGTAGAAAGTTGGGGGTGACTGGCTG
AGGGAGGCCCTGACTCCTAACTCTTATATGGTGGGGTTCGGTGCTAGTAG
AACTCATGGAGATTGTTTATTCAGCCCCTGTACTTGAAATGCAGGAAACG
GAGGCCTTTTCCCCAGGCTACCCCGCATACTCCACGACTACTGCTTGTCA
ATCCCACCCCATGTATTTTTTGGTCACAGGTCTCCAACAGAGTCACTTTA
AGCACTTACTGCCTGGCTGGCCTGGGCCAGCCAGGTCTATGAAGAGAAGA
GGCCTCTGGTCTTGGGGAGGGGAGACATAGCTTCATAGCTTCGCAGGGCG
GTCATGGGCATCTGGCTCATGGTGTTGAGTGGATCCTAAGGAGCAGATCT
GAAGAAACTTCCCCAAAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_h03.b1 MSMg01no507_h03.b1 CHROMAT_FILE:
MSMg01no507_h03.b1 PHD_FILE: MSMg01no507_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:00 2005
         (643 letters)



>mm_chr13_56513203_56514245
          Length = 1043

 Score = 1187 bits (614), Expect = 0.0
 Identities = 632/638 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcagagcatggttacctcatctttcttggactgcgtccaggttaatcttcatctt 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ggaattcagagcatggagacctcatctttcttggactgcgtccaggttaatcttcatctt 784

                                                                       
Query: 66  cccagaaccttggcatcttccctgccggtgagcatggctgtcagcagcatgcctggggca 125
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 783 cccagaaccttggcatcttccctgccagtgagcatggctgtcagcagcatgcctggggca 724

                                                                       
Query: 126 catgaggcttcttgcagccctcttccttcccaccttttcgttcctccacctgtcacccct 185
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 723 catgaggcttcttgcagccctcttccttcccaccttttcattcctccacctgtcacccct 664

                                                                       
Query: 186 gccttccctcactcattcctgaagccaagatctatctgattacgctctcacatccagcta 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gccttccctcactcattcctgaagccaagatctatctgattacgctctcacatccagcta 604

                                                                       
Query: 246 atgtcttccaagcaacggttgagccttttcacaaatcattctctggtgggcccgcatagg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 atgtcttccaagcaacggttgagccttttcacaaatcattctctggtgggcccgcatagg 544

                                                                       
Query: 306 gtgccaaatagaagacgacaccctctgccttcctctgccatctgtccttaaaagcattct 365
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 543 gtgccaaatagaagacgacaccctttgccttcctctgccatctgtccttaaaagcattct 484

                                                                       
Query: 366 tcctgtcttcagcatcatttatacccagccatgctctggaacacaagaaaatgggtaagc 425
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 tcctgtcttcagcatcatttatacccagccatgctctggaacacgagaaaatgggtaagc 424

                                                                       
Query: 426 caacatcagaggtaggaactgagcccagagaatgtgcagtatggcctctctagccctctg 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 caacatcagaggtaggaactgagcccagagaatgtgcagtatggcctctctagccctctg 364

                                                                       
Query: 486 cacttgcctcctctcccatcgttaagtgagcattctcatggctggcttgtgtttctcctt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cacttgcctcctctcccatcgttaagtgagcattctcatggctggcttgtgtttctcctt 304

                                                                       
Query: 546 cccttgtgtttcttgctgcaatcctggagcaaaggattatagaggaatcatggaagccag 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cccttgtgtttcttgctgcaatcctggagcaaaggattatagaggaatcatggaagccag 244

                                                 
Query: 606 acccttcatgactgtactgggacttgtctatgtacagg 643
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acccttcatgactgtactgggacttgtctatgtacagg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_h03.g1 MSMg01no507_h03.g1 CHROMAT_FILE:
MSMg01no507_h03.g1 PHD_FILE: MSMg01no507_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:00 2005
         (650 letters)



>mm_chr13_56355345_56356394
          Length = 1050

 Score =  992 bits (513), Expect = 0.0
 Identities = 624/695 (89%), Gaps = 61/695 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcccggctctgacaattagaccaggcaatttaaagttcat----tcaaactgaaca 56
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 172 tcactcccggctctgacaattagaccaggcaatttaaagttcattccgtcaaactgaaca 231

                                                                       
Query: 57  ctgactctgagctggtgacattttaaaggtcacttgaatcatggtgacaagctggaagag 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ctgactctgagctggtgacattttaaaggtcacttgaatcatggtgacaagctggaagag 291

                                                                       
Query: 117 ccattcattggtcactggtaaaagaggtggccaggaggtggtggatgtccagccagtctg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccattcattggtcactggtaaaagaggtggccaggaggtggtggatgtccagccagtctg 351

                                                                       
Query: 177 ctgagtggagctactgggctccatttgccaggtgtgtgtctgtggcttagcaagggaagc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgagtggagctactgggctccatttgccaggtgtgtgtctgtggcttagcaagggaagc 411

                                                                       
Query: 237 aggtccatg-tg----------gag----g---t--c--catgtggaggtgggtggcttg 274
           ||||||||| ||          |||    |   |  |  ||||||||||| |||||||||
Sbjct: 412 aggtccatgctgccgaagcttagagacttgcacttacttcatgtggaggttggtggcttg 471

                                                                       
Query: 275 ctctgggctggctgtctattaagtctggggtgtagaaagttgggggtgactggctgaggg 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 472 ctctgggctggctgtctattaagtctggggtgtagaaagttgggggtgactggctaaggg 531

                                                                       
Query: 335 aggccctgactcctaactcttatatggtggggttcggtgctagtagaactcatggagatt 394
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aggccctgactcctaactcttgtatggtggggttcggtgctagtagaactcatggagatt 591

                                                                       
Query: 395 gtttattcagcccctgtacttgaaatgcaggaaacggaggccttttccccaggctacccc 454
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 592 gtttattcagcctctgtacttgaaacgcaggaaacggaggccttttccccaggctgcccc 651

                                                                       
Query: 455 gcatactccacgactactgcttgtcaatcccaccccatgtatttttt------------- 501
           |  ||||  ||              ||||||||||||||| ||||||             
Sbjct: 652 gggtact--ac--------------aatcccaccccatgttttttttttttttttttttt 695

                                                                       
Query: 502 ------ggtcacaggtctccaacagagtcactttaagcacttactgcctggctggcctgg 555
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ttttttggtcacaggtctccaacagagtcactttaagcacttactgcctggctggcctgg 755

                                                                       
Query: 556 gccagccaggtctatgaagagaagaggcctctggtcttggggaggggagacatagcttca 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gccagccaggtctatgaagagaagaggcctctggtcttggggaggggagacatagcttca 815

                                              
Query: 616 tagcttcgcagggcggtcatgggcatctggctcat 650
           ||||||||||||| |||||||||||||||||||||
Sbjct: 816 tagcttcgcagggtggtcatgggcatctggctcat 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |