BAC Information

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BAC

Clone NameMSMg01-507N09
Chromosome13 (Build37)
Map Location 40,382,607 - 40,546,307
singlet/doubletdoublet
Overlap geneOfcc1
Upstream geneEG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneLOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507N09.T7 (MSMg01no507_n09.b1)MSMg01-507N09.TJ (MSMg01no507_n09.g1)
ACCAG581890AG581891
length752761
length of high quality
(start - end)		244 (70 - 313)433 (329 - 761)
definitionCHROMAT_FILE: MSMg01no507_n09.b1 PHD_FILE: MSMg01no507_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:31 2005CHROMAT_FILE: MSMg01no507_n09.g1 PHD_FILE: MSMg01no507_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,546,066 - 40,546,307)(40,382,607 - 40,383,039)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCCGACTAGTGNGGNAATCTATT
GTGTTTTCCAAATAAGGGACAAGAAAATGTTGTGCCCTTCTCTGACACAT
TTGATGATAAACCATTTCCTGACTCTGAGAGATTTATCAGTCAAAGGCAA
GAATGGCTGACTGATATGTTTACTTTGCTCGGGAGGGCAGCTGTTGGACA
GTTCTTACAGGTGAAGGTGGGTATCGTACTGATCATATTCATCTATTTCC
TTTCTGCAGACCCATTAGTTTCTTCTTAGTTAGCAATGGGAAGCGTAGAA
CTGATCAGTCATTTCGTANTCAGCCTTGCAGATCATATGTATGTTATTAA
AAGTACTATAAATGAATGAGATAGTGCTTTATTTAGTCAGTTATTCAGTG
TGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATAT
TTGTCTTTCTCTTTTTTCCCTCTTCTCCCTTTTTTTTTCTCTTCTTTTTC
TTTCCTCCCTTCTCCTTTCTTTCTTTCTTCTCCTCTCTTCCTCTTTTTTT
TCCCCTCCTCCTCTCCTTCCCTTTTTTCTTTTCTCTTTTTTCTTTCTTTT
CTTTCTCTTTTTCCCCCCTATTTTTCTTTCTCCCTTTTTTTCCTTNTCTC
CTTTTTTTTTTTTTTTCTTTTTCCTCCTTTCTCTCTTCTTTCTCTCTTCT
CTTTCTTTTATTCTAGCCTTTTTCCCCTTTCCCTCTTTCCTTTACTTTTT
TG

CATGAAGTGGGAGGCCTGGNGGCCGCCGGGCCGTCCACATTAGGNNGAAC
NATAGAAGGATTTCCAAAAAAAACTGCCACTGCAAAATGGNCAGCAGGTA
GCATTTCCCTCAAAGTTCTGTCCCCCTTTAGCCGCGATTATTCCAAGGGC
TGCATCTGTTTTTGAAAGAGTTTCAATTAAGTTCAGTAAGGGGGAAAAAG
TTGCAAGCATGGCTTATTAACATTTTTCAAAACCTCAGTGGTTCAACAAC
GCTTTCATCTCGACATTCGAATAGTTTGGCACATTCCTGAAGAGGATCTG
AAATTTAGTAAACTAAAATTCAATGCTTGGGACCTCGCAAAGGACACCGG
TCCTGCGGATTCTCCAAGGCCCCTCATTGGCACTTCCTGATACAATAGTA
AAGGATGTGACAGAGGGCTAAATGAAGCTGAGGTGGTAGCAAAATGTGTG
TCACCAGGAAGGGGCGTAATTGAATAGAGTCCTTGGCTGGCATCTAGCCT
GACAGATGACGTTCCAGCTCGCTAGGCAATGACCCTTCCGTGCAACTTTA
GGAGCTGCGCCCGCCATGGCTGAGCCTGCTTAGGTCAAAGGGCCGAGCCA
TGTGTAATTCAGAGCAGAAGAGGTCCCACGTTCGCTCCACAGAAACAATT
ACACTACTTATTTCACTTCAGCCCCGGCCCAAAACTCTCCAGCCTCCCAG
CTTCAGCGCAGTCAATCTAATTCTGCCCCGGGGCGATAAAGCCACATGAA
AATATGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_n09.b1 MSMg01no507_n09.b1 CHROMAT_FILE:
MSMg01no507_n09.b1 PHD_FILE: MSMg01no507_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:31 2005
         (244 letters)



>mm_chr13_40545866_40546509
          Length = 644

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaaaatgttgtgcccttctctgacacatttgatgataaaccatttcctgactctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caagaaaatgttgtgcccttctctgacacatttgatgataaaccatttcctgactctgag 383

                                                                       
Query: 61  agatttatcagtcaaaggcaagaatggctgactgatatgtttactttgctcgggagggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatttatcagtcaaaggcaagaatggctgactgatatgtttactttgctcgggagggca 323

                                                                       
Query: 121 gctgttggacagttcttacaggtgaaggtgggtatcgtactgatcatattcatctatttc 180
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 322 gctgtcggacagttcttacaggtgaaggtgggtatcttactgatcatattcatctatttc 263

                                                                       
Query: 181 ctttctgcagacccattagtttcttcttagttagcaatgggaagcgtagaactgatcagt 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 262 ctttctgcagacccattagtttcttcttaattagcaatgggaagcgtagaactgatcagt 203

             
Query: 241 ca 242
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no507_n09.g1 MSMg01no507_n09.g1 CHROMAT_FILE:
MSMg01no507_n09.g1 PHD_FILE: MSMg01no507_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:31 2005
         (433 letters)



>mm_chr13_40382407_40383239
          Length = 833

 Score =  783 bits (405), Expect = 0.0
 Identities = 426/433 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggacctcgcaaaggacaccggtcctgcggattctccaaggcccctcattggcacttcct 60
           ||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 201 gggacctcgcaaaggaccccggtcctgcggatccaccaaggcccctcattggcacttcct 260

                                                                       
Query: 61  gatacaatagtaaaggatgtgacagagggctaaatgaagctgaggtggtagcaaaatgtg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gatacaatagtaaaggatgtgacagagggttaaatgaagctgaggtggtagcaaaatgtg 320

                                                                       
Query: 121 tgtcaccaggaaggggcgtaattgaatagagtccttggctggcatctagcctgacagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tgtcaccaggaaggggcgtaattgaatagagtccttggctggcatctcgcctgacagatg 380

                                                                       
Query: 181 acgttccagctcgctaggcaatgacccttccgtgcaactttaggagctgcgcccgccatg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 acgttccagctcgctaggcaatgacccttctgtgcaactttaggagctgcgcccgccatg 440

                                                                       
Query: 241 gctgagcctgcttaggtcaaagggccgagccatgtgtaattcagagcagaagaggtccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgagcctgcttaggtcaaagggccgagccatgtgtaattcagagcagaagaggtccca 500

                                                                       
Query: 301 cgttcgctccacagaaacaattacactacttatttcacttcagccccggcccaaaactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgttcgctccacagaaacaattacactacttatttcacttcagccccggcccaaaactct 560

                                                                       
Query: 361 ccagcctcccagcttcagcgcagtcaatctaattctgccccggggcgataaagccacatg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ccagcctcccagcttcagcgcagtcaatctaattctgccctggggcgataaagccacatg 620

                        
Query: 421 aaaatatgtggtg 433
           |||||||||||||
Sbjct: 621 aaaatatgtggtg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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