BAC Information

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BAC

Clone NameMSMg01-508A02
Chromosome13 (Build37)
Map Location 46,488,429 - 46,488,753
singlet/doubletsinglet
Overlap genenone
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574
Downstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508A02.T7 (MSMg01no508_a02.b1)MSMg01-508A02.TJ (MSMg01no508_a02.g1)
ACCAG582019AG582020
length756769
length of high quality
(start - end)
680 (49 - 728)494 (78 - 571)
definitionCHROMAT_FILE: MSMg01no508_a02.b1 PHD_FILE: MSMg01no508_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:45 2005CHROMAT_FILE: MSMg01no508_a02.g1 PHD_FILE: MSMg01no508_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACCTATATCGGGGCGGGGCGATACNACTCACTATTTCGAGAGGATC
CGCGGAATTCTAGGGATATAGCTGAAATGATTTCTTAGACTGGCATGCTA
CATTAGTATAAAAGACAGGCATTACCAAATTTATAATAAAGCTTGTGAGT
TGTGCCAGGGAACGACGGAGCTCACGCAGAAGAGGAAGCAGGCAGCAGAA
GGAACTAGCTGAGGAACTTACAGGTTGGGCTGAGAAGACAGACTGTAAAC
CAGCAGGCTTTCAAAGAACCTAAAGAACACACATCCAAACAAAACAAAGC
TTGGCCATAACACCTCACAAAGCAGCAGACTACTTAGGAAAGACATAGAT
TGTTCATGTATCTGTGGGCAGGGTTTCACTATGCAGCCCTGGTTGGCCTG
GAACTCACAGAGATCTGTCATGTCTGCCTCCTGGCTGCTGGGATTAAGTG
CATGTGCCAGCCATGCCTGGCAAAGAGATGGAAAATCTAAAGGAAAACAT
TATGGAGATGAAATGTATGGCAACTTAAATGAAACTTTCCCGAGAGGCTC
ACAGGCCAAAAGGTGTTCACAGAGGAATCGCAGAAATGGAGGGGGGGTCA
CTTGAGATTAGCCAGCCTGTGGGACACAGAAAATAGACCTGGACCGACAT
GATGGAGTTTTAGAGAAAGAGATTAGAAAATGTAGTACAAGAGATGATGC
CTGAAATGAATGGTCTTCGGAGTTTAGGAAAATGGTCTATGCATTCACAA
AGCCCA
NNCCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCCACCTGCCTCTCCCTC
CCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCCTGCTTGTCCTTT
TCTTTTTTTTAAACTGATTCTCTAATCACATTTTGTGTGGGAATATCTGG
CTGTTGAGCACCAACTCCTTAAAAGACTCTTCCCTCCATTATATTATCTT
TACTCCTTTTCAAAGATCATTAGCTTTCATTTGTGATTCTATTTCTGGAA
TATATACTCAGTTAACATTGATCTATTTGTCTATTCATTTGCCAATACCA
TACTGTATTGATTACGGTAGTCTTTTAGTAAATCTTTAAATTGATACTGC
CAAGCTTCTAGTTATTCAGTGTATGTGTGTGTGTGTGTGTGAGAGAGAGA
GAGCATGAGAGAGCAAGCAAGAGAGAGACAGATAGACAGACACACAGACA
GAAAAAGACAGAGAAGCAGAGATGGAGAGAAAACACACATATACAGGATG
GAGAGAGAAGGAAGAGGAGGAGGAGGATGAGAAGGACATCCTTTTTCTTC
TCTTTATACCCTTTTTTGTGCTTTTTTCTCCCTGTCTATTCTTCTACCTC
TATTATTTATTACTCTCTTATTTTATTTTTTTTTCTCCCTCTTCCTTTTT
TTTAGTGTTTTCTTTTATCTTCTCTCCTCCCTCACACATTATTTTTTATT
CTTCATTTACATTAAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_a02.b1 MSMg01no508_a02.b1 CHROMAT_FILE:
MSMg01no508_a02.b1 PHD_FILE: MSMg01no508_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:45 2005
         (680 letters)



>mm_chr13_46488429_46489508
          Length = 1080

 Score =  590 bits (305), Expect = e-172
 Identities = 320/325 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctagggatatagctgaaatgatttcttagactggcatgctacattagtataaaa 65
           ||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ggaattctagggagagagctgaactgatttcttagactgtcatgctacattagtataaaa 266

                                                                       
Query: 66  gacaggcattaccaaatttataataaagcttgtgagttgtgccagggaacgacggagctc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gacaggcattaccaaatttataataaagcttgtgagttgtgccagggaacgacggagctc 206

                                                                       
Query: 126 acgcagaagaggaagcaggcagcagaaggaactagctgaggaacttacaggttgggctga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 acgcagaagaggaagcaggcagcagaaggaactagctgaggaacttacaggctgggctga 146

                                                                       
Query: 186 gaagacagactgtaaaccagcaggctttcaaagaacctaaagaacacacatccaaacaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaagacagactgtaaaccagcaggctttcaaagaacctaaagaacacacatccaaacaaa 86

                                                                       
Query: 246 acaaagcttggccataacacctcacaaagcagcagactacttaggaaagacatagattgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  acaaagcttggccataacacctcacaaagcagcagactacttaggaaagacatagattgt 26

                                    
Query: 306 tcatgtatctgtgggcagggtttca 330
           |||||||||||||||||||||||||
Sbjct: 25  tcatgtatctgtgggcagggtttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)