BAC Information

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BAC

Clone NameMSMg01-508I14
Chromosome13 (Build37)
Map Location 84,385,651 - 84,386,121
singlet/doubletsinglet
Overlap geneTmem161b
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101
Downstream geneLOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508I14.T7 (MSMg01no508_i14.b1)MSMg01-508I14.TJ (MSMg01no508_i14.g1)
ACCAG582427AG582428
length7541,126
length of high quality
(start - end)
653 (50 - 702)---
definitionCHROMAT_FILE: MSMg01no508_i14.b1 PHD_FILE: MSMg01no508_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:28 2005CHROMAT_FILE: MSMg01no508_i14.g1 PHD_FILE: MSMg01no508_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACACTTTATCCACTTAACAAACCTCTAGACAATTAACAAAG
GAAAACAATTTAAATGACCTAAATCATACAGTACTTAGTTATGGACTTAC
ATTGAACCCAGGTACCTAATTTCAAATTTAATGATTCTTCTACTAAAGTC
TACTGAGATCACTTAATTAACATACATTCAGGAACAAGCCACTGCATGGT
GCTTTAGAACACTAGCAGCAAGGAAATGTGTGTGGTCTTGACCTCTAATG
AGCAGTTAGCACATACTTTATGTACTGTCTGGCTTTGTCTCAACTTGACA
CAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGGTGAGGAAGTGCCCCC
ATGAGTTCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGAGTTGAGG
ACCCCTTGTGGGTGGTACCATCTCTGGACTGGTAGTCTTGGTTCTATAAG
AGAGCAGGCTGAACAACCCAGGGGAAGCAAGCCAAGCCAGTAAGTAACAT
CCCTCCATGGCCTCTGCGTCAGCTCCTGCTTCCTGACCTGCTTGACTTCC
ACTCCTGACTTCCTTGGTGATGAACAGCAGTGTGGAAGTGTAAGCTGAAT
AAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCAGGCA
TAGAAACCCTGATTAAGACACCTTTTAGATGAGTTACATATTCTATTAAA
AAGG
GTGGTGGGATGTGTGGGACTTATTTGTTCTTTATGGCGAGTATACGTTTC
TCCTCCTATGACNTGTGGTTGATGTGATAGGGGCTCTTCTCCCATGAAGC
CGCTAGTACTCGCGCGTCTTGTGTGTGGTGAGTGGGGTATTGTCGGTGGA
CTTATCATAATCGTCGTACTCGTGTTTGATAACGAGCTACAGTGCGCGCG
AAATAGATTCTATGAGCCGATACGCATGTACTGCTGTTATAAGTATATAC
CCCTCTGAGGGGCGCGATGTGCGACGTGTGTATCACGCATGTGTGAGTAT
GTGTTGTGATTTCCTCTCTACCATACCGACCTCATGCTTGCCCATTGTTC
CACCTGCGATGCCACACGTTACACATGTTAGGCACGCGGTGAGAGTATGC
GTGTAATACACGACAACGCATGTGTGCGCCGGTTAGAGATCTATCTCCAT
ACTATCAGCGTGTTGCTCTATAAGCACGGCTCGTGATGGTAATACATAGC
ATGCCTTGTATAAGCACGTTGGTGTTATATGTATTCTTTTATATGCTCTC
TCGATATGTGTAGTCGTCGTTGATTTTTATTCCGCGGGGGGTAGCAATCG
TTTCTTGATCGCCGCTTCGCGTGCGAGAGGAAAATCTTATATAATCTTGG
AATCGCGCTCGTTGCAATGAGTTGTTGGGGCGCCGCGTATTATTGCTGTG
ATAGTCTACGCCCGTACTGTGGATGATACCGTGGAATGAATACATTTATT
CACAATCCTACGATGTGAACCGATCTGATGTAGTGTACGCGTTGTGCGGA
CTGAGACGGAGCAACGCGATTGTATATATTGTTCTATATGCCGACCGCAC
ACTCATGCCGCTGGGTTTAGCACGCGTATATCAGTATAACGACGGTGATG
ATATGAGGCGTATATATACGCAGCGTGCTGAGTGATATACGACACAACGT
GCCACACTGCAATGTTACACTGCGCATCACAACTGCTAGAGTGTCTTGTA
TTCTTTCTCGCACACCGACATGTGTACTATTGAATAGCGATGACGAAGGC
GTATCTACACCACGCACGATCTCGCGACTCACTGATGATTGTAGATCCGC
ACGTCACGTCGCGATGATGACCCGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_i14.b1 MSMg01no508_i14.b1 CHROMAT_FILE:
MSMg01no508_i14.b1 PHD_FILE: MSMg01no508_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:28 2005
         (653 letters)



>mm_chr13_84385651_84386703
          Length = 1053

 Score =  880 bits (455), Expect = 0.0
 Identities = 467/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacactttatccacttaacaaacctctagacaattaacaaaggaaaacaatttaa 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaattcacactttaggcacttaacaaacctctagacaattaacaaaggaaaacaatttaa 412

                                                                       
Query: 65  atgacctaaatcatacagtacttagttatggacttacattgaacccaggtacctaatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atgacctaaatcatacagtacttagttatggacttacattgaacccaggtacctaatttc 352

                                                                       
Query: 125 aaatttaatgattcttctactaaagtctactgagatcacttaattaacatacattcagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaatttaatgattcttctactaaagtctactgagatcacttaattaacatacattcagga 292

                                                                       
Query: 185 acaagccactgcatggtgctttagaacactagcagcaaggaaatgtgtgtggtcttgacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 acaagccactgcatggtgctttagaacactagcagcaaggaaatgtgtgtggtcttgacc 232

                                                                       
Query: 245 tctaatgagcagttagcacatactttatgtactgtctggctttgtctcaacttgacacaa 304
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 231 tctaatgagcagttagcacatactttatgtactggctggctttgtgtcaacttgacacaa 172

                                                                       
Query: 305 gctggagttatcacagagaaaggagcttcaggtgaggaagtgcccccatgagttccagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gctggagttatcacagagaaaggagcttcaggtgaggaagtgcccccatgagttccagct 112

                                                                       
Query: 365 gtggggcattttctcaattagtgatcaagagttgaggaccccttgtgggtggtaccatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtggggcattttctcaattagtgatcaagagttgaggaccccttgtgggtggtaccatct 52

                                                              
Query: 425 ctggactggtagtcttggttctataagagagcaggctgaacaacccagggg 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  ctggactggtagtcttggttctataagagagcaggctgaacaacccagggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)