Query= MSMg01no508_k12.b1 MSMg01no508_k12.b1 CHROMAT_FILE:
MSMg01no508_k12.b1 PHD_FILE: MSMg01no508_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:38 2005
(421 letters)
>mm_chr13_101065141_101065968
Length = 828
Score = 485 bits (251), Expect = e-141
Identities = 381/431 (88%), Gaps = 19/431 (4%)
Strand = Plus / Minus
Query: 1 tacagtgtgagg-tgttgtctcacaaaacaaaaagaaca-aaaagttctgggagtgcatt 58
|||||||||||| | ||||||| |||||||||||| | ||||||| ||||| ||||||
Sbjct: 673 tacagtgtgaggct-ctgtctcatgaaacaaaaagaaaagaaaagttttgggaatgcatt 615
Query: 59 agcaagcacatacac----ataattacatgtaataaaaattttaaatataaagtaaactt 114
|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 614 agcaagcacacacacaaaaataattacatgtaataaaaattttaaatataaaataaacct 555
Query: 115 cacaatttatgttacagaattattctatctttcatgttactttgtataaaatgtttattc 174
||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||
Sbjct: 554 cacaatttatgttacagaactattctttctttcatgttactttgtatagaatgtttattc 495
Query: 175 ataaatgcagcatacaaacatagagacattagagttaaaaaactgaaggtggttttactg 234
||||||| || ||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 494 ataaatggagaatacaaacatagagacattagggttaaaaagctgaaggtaattttactg 435
Query: 235 agccattattcaattttttt-----tca-aatttcaaccattagtgctatgtttatatca 288
|||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||
Sbjct: 434 agccatcattcaatttttttcttttttagaatttcaatcattagtgctatgtttatatca 375
Query: 289 tttctgcccatccttcctccaattccttccatgtctttcccactcagtctcaaattcatg 348
||||||| ||| |||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct: 374 tttctgcacattcttcctcccattccttccatgtcttccccactcactctcaaattcatg 315
Query: 349 acacttcttgtgtgcatggtggggggaggataaaggagaaaggcagagagagggggaggg 408
|| | ||| ||||||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct: 314 ac--tacttatgtgcatgg---ggggaggataaaggagagaggcagagag-gggggaggg 261
Query: 409 aaggaggaagg 419
| ||| |||||
Sbjct: 260 agggaagaagg 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 828
Length adjustment: 9
Effective length of query: 412
Effective length of database: 819
Effective search space: 337428
Effective search space used: 337428
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_k12.g1 MSMg01no508_k12.g1 CHROMAT_FILE:
MSMg01no508_k12.g1 PHD_FILE: MSMg01no508_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:38 2005
(528 letters)
>mm_chr13_100820143_100821070
Length = 928
Score = 924 bits (478), Expect = 0.0
Identities = 511/534 (95%), Gaps = 21/534 (3%)
Strand = Plus / Plus
Query: 1 ttacttatatatctagaaatattgcagagtaagggggatttttctacataataaattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacttatatatctagaaatattgcagagtaagggggatttttctacataataaattttt 260
Query: 61 aatactagtctaataaccatgatatgatgactgagataaaataatcacaaaattagaaat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcctagtctaataaccatgatatgatgactgagataaaataatcacaaaattagaaat 320
Query: 121 aactaaaagaaaaacaaataaaatacatggaaccaatcaataatgactatgaaattaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaaaagaaaaacaaataaaatacatggaaccaatcaataatgactatgaaattaaac 380
Query: 181 aatggaactggtttatcatgtagagtatgtagattatgaggcagaggcaggcggatttct 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaactggtttatcgtgtagagtatgtagattatgaggcagaggcaggcggatttct 440
Query: 241 gagttcttattt------agcctggtctacaaagtgagttccaggatagccagggctata 294
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagttc------gaggccagcctggtctacaaagtgagttccaggatagccagggctata 494
Query: 295 cagagaaaccctgtctcgaaaaacgaaagaaaaaaaaaaaaaaaaaaaccaaaaccttag 354
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 495 cagagaaaccctgtctcgaaaaacgaaagaaaaaaaaaaaaaaaa---------ccttag 545
Query: 355 gtttcttccgactttcttaaaaaactgaaagtaccctttgttattgtttacagccaaaca 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtttcttccgactttcttaaaaaactgaaagtaccctttgttattgtttacagccaaaca 605
Query: 415 agcattaacattctaattacccaggtaaggcacactatcttttggtcaggaaaaaaatat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agcattaacattctaattacccaggtaaggcacactatcttttggtcaggaaaaaaatat 665
Query: 475 acattgttataaatacttgtaaataaaaaagtgtattaaggtagaacttcttta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 acattgttataaatacttgtaaataaaaaagtgtattaaggtagaacttcttta 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
