Query= MSMg01no509_f18.b1 MSMg01no509_f18.b1 CHROMAT_FILE:
MSMg01no509_f18.b1 PHD_FILE: MSMg01no509_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:34 2005
(511 letters)
>mm_chr13_25217838_25218748
Length = 911
Score = 849 bits (439), Expect = 0.0
Identities = 487/509 (95%), Gaps = 12/509 (2%)
Strand = Plus / Plus
Query: 5 gaattcatttta--ttccaggtattttgggactcagatgatattatgcatatatgtattt 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcattttaagt---aggtattttgggactcagatgatattatgcatatatgtattt 262
Query: 63 tataaacctcaatgtgattgtattattcaactcagtcattgtgttgaacaggtggcaggt 122
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 263 tataaatctcaatgtgattgtattgttcaactcagtcattgtgttgaacaggtggcagat 322
Query: 123 gagatacccacaagtgcaagggtgttttcagtagaaaatgaagcagaaataccgttccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 gagatacccacaagtgcaagggtgttttcagtagaaaatgaagcagaaataccattccag 382
Query: 183 aaaagcccagaactcattctatcctactatgtatagatcaagaacatcttgacccaaagg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaaagcccagaactcattctatcctactatgtatagatcaagaacatcttgacccaaagg 442
Query: 243 cggcaagaaggagaatccctcctataggcagccatgggacaagcctattcaaagcatcac 302
||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 443 cggcaagaaggagaatctctcctataggcagccatgggacaatcctattgaaagcatcac 502
Query: 303 atgctatggtgcttaacctaggcagcaggtcagtactggatactgatctgatgttttaca 362
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 503 atgctatggtgcttaacctaggcagcaggtcagtgctggatactgttctgatgttttaca 562
Query: 363 agctaagttttcaagttcttagtgtaacagttccctagcccagcaaatggcctgggaaca 422
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 agctaagttttcaagttcttagtgtaacagttccctagcccagc-------ctgggaaca 615
Query: 423 gggaaggaaggagaaagcagtttatccagagtccaaggcagtacagtagccaaaagttct 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 gggaaggaaggagaaagcagtttatccagagtccaaggcagtgcagtagccaaaagttct 675
Query: 483 tgaaatgcctgggctgggggctggtgaga 511
|||||||||||||||||||||||||||||
Sbjct: 676 tgaaatgcctgggctgggggctggtgaga 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_f18.g1 MSMg01no509_f18.g1 CHROMAT_FILE:
MSMg01no509_f18.g1 PHD_FILE: MSMg01no509_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:34 2005
(287 letters)
>mm_chr13_25387297_25387982
Length = 686
Score = 489 bits (253), Expect = e-143
Identities = 276/287 (96%), Gaps = 7/287 (2%)
Strand = Plus / Minus
Query: 1 gagagatctgccagaccctgaggggagaaagaaagactgccaaaacttgagcatcttcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gagagatctgccagaccctgaggggagaaagaaagactgccaaaacttgagcatcttcga 529
Query: 61 aattaggatagctgctgccttcctccattttgcaagggaagcaaaaaaaaaaaaaaaaaa 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 528 aattaggatagctgctgccttcctccattttgcaagggaagc------aaaaaaaaaaaa 475
Query: 121 agtggggaattttgtgaggctttttaagtgttcttcactggcaggggtttgagcttgttc 180
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 474 agtggggaatttt-tgaggctttttaagtgttcttcactggcaggggttcgagcttgttc 416
Query: 181 tcttttgactgccagaacataacttccacctgccaaaattctgctgtgctgtcctggcct 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tcttttgactgccagaatgtaacttccacctgccaaaattctgctgtgctgtcctggcct 356
Query: 241 caggggatcatgttcatccttacttctgctatatagctcatctctga 287
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 caggggatcatgttcatctttacttctgctatatagctcatctctga 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space: 188206
Effective search space used: 188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
