Query= MSMg01no509_g16.b1 MSMg01no509_g16.b1 CHROMAT_FILE:
MSMg01no509_g16.b1 PHD_FILE: MSMg01no509_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:38 2005
(669 letters)
>mm_chr13_104205954_104207022
Length = 1069
Score = 748 bits (387), Expect = 0.0
Identities = 396/399 (99%)
Strand = Plus / Minus
Query: 1 atttgctcaacagtccctcatctcagacataaaggctgtgctttgtgcataagatggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atttgctcaacagtccctcatctcagacataaaggctgtgctttgtgcataagatggttt 340
Query: 61 tgttaggacgattttgaaacaatccttgaaatcaaattactttttgaacccaaatcaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgttaggacgattttgaaacaatccttgaaatcaaattactttttgaacccaaatcaaga 280
Query: 121 attcacatttctccatttaaaatgctctccattctcagcttttttctaacccagatttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 attcacatttctccatttaaaatgctctccattctcagcttttttctaacccagatttct 220
Query: 181 ttggaacttctaacatcactgtgatggtttgaatgtgtttggcccagggagtactaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ttggaacttctaacatcactgtgatggtttgaatgtgtttggcccagggagtactaggag 160
Query: 241 gtgttgtcttgttggagtgggtgtggctttgttggtggaagtgtgtcattgtggacatgg 300
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtgtagccttgttggagtgggtgtggctttgttggtggaagtgtgtcattgtggacatgg 100
Query: 301 gctttaagaccctcatcctagctccctggaagccagtattctcctgtttgcctttggaat 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 99 gctttaagaccctcatcctagctccctggaagccagtgttctcctgtttgcctttggaat 40
Query: 361 aagatgtagaactctagttctcccctatattatgcctgc 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 aagatgtagaactctagttctcccctatattatgcctgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_g16.g1 MSMg01no509_g16.g1 CHROMAT_FILE:
MSMg01no509_g16.g1 PHD_FILE: MSMg01no509_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:39 2005
(555 letters)
>mm_chr13_104150683_104151637
Length = 955
Score = 934 bits (483), Expect = 0.0
Identities = 537/567 (94%), Gaps = 22/567 (3%)
Strand = Plus / Plus
Query: 1 tcttgaccctaaaacatgtaaacagaagaatgttctaaaggaatcctgaggtaatctcat 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tcttgaccctaaaacatgtaaacagaaggatgttctaaaggaatcctgaggtaatctcat 260
Query: 61 aaaatagtcacagccagctttgtgtacaaagagctttctcgaaagcgcgatcccagcctc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaaatagtcacagccagctttgtgtacaaagagctttctcgaaagc---------gcctc 311
Query: 121 agaaacagtcctgcggggtaagagatataatttaatctgtttccctaacagaagacttgt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 312 agaaacagtcctgcggggtaag-gatataatttaatctgtttccctaacagaagacttgt 370
Query: 181 ttgtggttcagaaaatgaaataaaacagccaagaacattcaacaagttaactag-cagcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 371 ttgtggttcagaaaatgaaataaaacagccaagaacattcaacaagttaaccagtcagcc 430
Query: 240 tggcttctgataacttcctggttataagactcgctgttcagaacgtggtattttaaactc 299
||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 431 tggctcctgagaacttcctggttataggactcgctgttcagaacatggtattttaaactc 490
Query: 300 tggtaaggctctcaatggggacacagggcgggccagggtgatcagtggtgaacatgtgag 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 491 tggtaaggctctcaatggggacacagggcaggccagggtgatcagtggtgaacatgtgag 550
Query: 360 cagagaagcatctttaagcactggtaaccttcagaaagaggtttaggaagagggcaaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 551 cagagaagcatctttaagcactggtaaccttcagaaagaggtttaggaagagggcaacag 610
Query: 420 ctgggaagttgcagaagatgatttgggcttgggctgggagagatttgct----------- 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgggaagttgcagaagatgatttgggcttgggctgggagagatttgcttaaagtccgct 670
Query: 469 aactgcaaattgaatgctgagaagaaggcgggcccctgaggatgtgtgagaggactgagc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aactgcaaattgaatgctgagaagaaggcgggcccctgaggatgtgtgagaggactgagc 730
Query: 529 tcagctccagagcaagcctctcacctc 555
|||||||||||||||||||||||||||
Sbjct: 731 tcagctccagagcaagcctctcacctc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
