Query= MSMg01no509_j17.b1 MSMg01no509_j17.b1 CHROMAT_FILE:
MSMg01no509_j17.b1 PHD_FILE: MSMg01no509_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:53 2005
(540 letters)
>mm_chr13_6224038_6224977
Length = 940
Score = 1013 bits (524), Expect = 0.0
Identities = 533/536 (99%)
Strand = Plus / Minus
Query: 5 gaattcaaactgttcacttctagcttataatgcaatagctttactcacctaggcatctcc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattcaaactgaaaacttctagcttataatgcaatagctttactcacctaggcatctcc 681
Query: 65 ctcatgtacagttttgaccaaggcctgttggtagattgcttattcttaatagagtgggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcatgtacagttttgaccaaggcctgttggtagattgcttattcttaatagagtgggtg 621
Query: 125 ttcagcccatgctctttattacacactgctcttcttaacagactacaaacattttaacac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcagcccatgctctttattacacactgctcttcttaacagactacaaacattttaacac 561
Query: 185 tgtatacaaaataaattcttcaaggagaaatctacattgtttttggtagaatcacacttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtatacaaaataaattcttcaaggagaaatctacattgtttttggtagaatcacacttt 501
Query: 245 tactagcctcgtgatgttttcaatattttaaaaatatgttaatagatagaaaactcctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tactagcctcgtgatgttttcaatattttaaaaatatgttaatagatagaaaactcctta 441
Query: 305 ggagagcagatccatttattctacacagcttgtgctaaataggcaacaatgtgaggcata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggagagcagatccatttattctacacagcttgtgctaaataggcaacaatgtgaggcata 381
Query: 365 taaataggtctagatgtgctttgcttaaagatgttattatcacagtgaagtgtggccacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaataggtctagatgtgctttgcttaaagatgttattatcacagtgaagtgtggccacc 321
Query: 425 tgcagcatagttagaaaaaaagtgtaactttctgaagcatcctgagagtccactctcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcagcatagttagaaaaaaagtgtaactttctgaagcatcctgagagtccactctcaat 261
Query: 485 tttcactgtcaagtacaacattattaaataagtttgccttattctatttttaacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttcactgtcaagtacaacattattaaataagtttgccttattctatttttaacag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_j17.g1 MSMg01no509_j17.g1 CHROMAT_FILE:
MSMg01no509_j17.g1 PHD_FILE: MSMg01no509_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:53 2005
(504 letters)
>mm_chr13_6050143_6051047
Length = 905
Score = 884 bits (457), Expect = 0.0
Identities = 493/505 (97%), Gaps = 1/505 (0%)
Strand = Plus / Plus
Query: 1 aatgtttgttgggggtcttccaccgtgggagctcatgtggatactgtttctaaagcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtttgttgggggtcttccaccgtgggagctcatgtggatactgtttctaaagcctga 260
Query: 61 tagtggacctctgtatttctagttaagtgttaggctgggtgttttatagcaggattatgg 120
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tagtggacctctgtacttctagttaagtggtaggctgggtgttttatagcaggattatgg 320
Query: 121 aacggagcaaatctgggtcaaaaagaccaagagaaagcaaggtacctgaaaagtttttgt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggagcaaatctgggtcaaaaagaccaagagaaagcaaggtacctgaaaagtttttgt 380
Query: 181 ggactttacaactgtctgtgagaaagtgagaactattaaaagcagaaacagaaagggact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactttacaactgtctgtgagaaagtgagaactattaaaagcagaaacagaaagggaca 440
Query: 241 tttttcttgtaggtgcccctgtacaca-cgcacactctaggtgaggggcccaccaggtgc 299
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaccttgtaggtgcccctgtacacaacgcacactctaggtgaggggcccaccaggtgc 500
Query: 300 tattgctttcttctgcctgcctatctgttgttccacaccctcttgtcacatgaggacaga 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattgctttcttttgcctgcctatctgttgttccacaccctcttgtcacatgaggacaga 560
Query: 360 aacacaaagggaatttgcttgcttgttgactaccacctccgcataaagcaatggctagcc 419
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aacacaaagagaatttgcttgcttgttgactaccacctccggataaagcaatggctagcc 620
Query: 420 ctaaagtgccttttctctcttccagatcctttcttacggaaaagaagtagatggaaatat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaaagtgccttttctctcttccagatcctttcttacggaaaagaagtagatggaaatat 680
Query: 480 gaaacgattagaatgaaaggatacg 504
||||||||||||||||||| |||||
Sbjct: 681 gaaacgattagaatgaaagaatacg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
