Query= MSMg01no509_m18.b1 MSMg01no509_m18.b1 CHROMAT_FILE:
MSMg01no509_m18.b1 PHD_FILE: MSMg01no509_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:09 2005
(327 letters)
>mm_chr13_60618940_60619666
Length = 727
Score = 522 bits (270), Expect = e-152
Identities = 308/326 (94%), Gaps = 11/326 (3%)
Strand = Plus / Plus
Query: 1 agggatcctggtgtcaggtctgttttgttcagttaggagctgagacctttgcaggggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggatcctggtgtcaggtctgttttgttcagttaggagctgagacctttgcaggggcat 260
Query: 61 tctgacttcactgcacgcttgacctcataagcagagaggtctttatactgatgaggagag 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgacgtcactgcacgcttgacctcataagcagagaggtctttatactgatgaggaga- 319
Query: 121 ggggagacactcggatactgcgtctggataattaagaacaatctgcctacaatccaggag 180
||||||||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct: 320 -------cactcggatgctgtgactggaaaattaagaacaatctgcctacaatccaggag 372
Query: 181 gtggattagggtaacttttagcattttctgccctgaaacttctagtacactgatctgtgg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtggattaggttaacttttagcattttctgccctgaaacttctagtacactgatctgtgg 432
Query: 241 taatagagtaaaaaa-tcaaatcaagcatag--tgtcagatctcagatgggtgaacatag 297
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 433 taatagagtaaaaaaatcaaatcaagcatagagtgtcagatctcagatgggtgaacatag 492
Query: 298 gagtcatagcaccaggaaaaggtaaa 323
||||||| ||||||||||||||||||
Sbjct: 493 gagtcatggcaccaggaaaaggtaaa 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_m18.g1 MSMg01no509_m18.g1 CHROMAT_FILE:
MSMg01no509_m18.g1 PHD_FILE: MSMg01no509_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:09 2005
(554 letters)
>mm_chr13_60769913_60770866
Length = 954
Score = 1002 bits (518), Expect = 0.0
Identities = 545/554 (98%)
Strand = Plus / Minus
Query: 1 atgtagtcaggcttacccagcaagcactttgactagctgagccatctccagacctttaat 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atgtagtcaggcttacccggcaagcactttgactagctgagccatctccagacctttaat 744
Query: 61 tcttattggtagcaatacattcagtacaggtagacacttgctctcagcccgcctttaaca 120
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcttattagtaacaatacattcagtacaggtagacacttgctctcagcccgcctttaaca 684
Query: 121 caaattctaatgtagattcatagattctgcctgcgtgtttgttggggaacgggtgggtgt 180
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 683 caaattttaatgtagattcatagattctgcctgtgtgtttgttggggaacgggtgggtgt 624
Query: 181 atgaagaatgggcccatcaaaacccaatgaagtttggaacatgcagaatgctaatggtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgaagaatgggcccatcaaaacccaatgaagtttggaacatgcagaatgctaatggtga 564
Query: 241 gattgcactaaaaacgggacacccaattactgagcacagctgcgtcaagagaaagcaaaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gactgcactaaaaacgggacacccaattactgagcacagctgcgtcaagagaaagcaaaa 504
Query: 301 tgctgaatgaccaaaaacactcctaagacctgtgagatgtggccgctttggattcaagac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cgctgaatgaccaaaaacactcctaagacctgtgagatgtggccgctttggattcaagac 444
Query: 361 ttaaggtattctagacctccctcagggggcagggctgggtctgtcctgttcccaccggta 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 443 ttaaggtattctagacctccctcagggggcaaggctgggtctgtcctgttcccactggta 384
Query: 421 cactggatctaggcttctgctatgccctgaactgttgtgcatgctagacaacttctcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cactggatctaggcttctgctatgccctgaactgttgtgcatgctagacaacttctcaat 324
Query: 481 gccgggtcgggttgttctgttatgagtttggcaccatcaggttggaagaaaattattttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gccgggtcgggttgttctgttatgagtttggcaccatcaggttggaagaaaattattttt 264
Query: 541 attcctctcagggt 554
||||||||||||||
Sbjct: 263 attcctctcagggt 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
