BAC Information

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BAC

Clone NameMSMg01-509O09
Chromosome13 (Build37)
Map Location 111,467,611 - 111,468,216
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509O09.T7 (MSMg01no509_o09.b1)MSMg01-509O09.TJ (MSMg01no509_o09.g1)
ACCAG583464AG583465
length739751
length of high quality
(start - end)
604 (76 - 679)663 (81 - 743)
definitionCHROMAT_FILE: MSMg01no509_o09.b1 PHD_FILE: MSMg01no509_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:18 2005CHROMAT_FILE: MSMg01no509_o09.g1 PHD_FILE: MSMg01no509_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTATAAATTGCGGGCGCGAAACGACTCACAATTCAATAGGACCGCG
GAATTCNTTTTTTCCTGACAATGGCCAGCAGAACCAATTCTTCCCTGGAG
TTCATACTCTCTGTTGCTAAATATAATAGCAACAAATATTTGCTATTAAA
TCACCATAGCAATATAATACTATATCTAAGAATAGAAGGTACACAGTAAT
ATACTACACTACACTAAGTATGCAAGGACAGTGGTGTTTTGATAGGTATG
TTTGCCATAGTCTTGTGTGAATTCTTGGCTAATAGAGAGTGGCACTATTA
GGAGGTGTGGCTTTGTTTTTTTAGGTATGGCCTTATTGCAGGAAATATGT
CACTGTAGGGGTGGGCTTTGAGGTCTATGCTCATGCTCCACCTAGTGTGG
GACTCAGTCTCCTTCTGACCAAGATGTACAACTCTCAGTTCACTCTCCAG
CACCATGTCTGCCTGCACACGGTCATGCTTCCTGCCATGGTGAGAATGGA
CTAAGCTTTTCTGTACCAGCACCCATCAAATGGTGTGCTTTATAGGAGCT
GCTATGGTCCTGGTGTCTCTTCACAGAGTGAAACCCTAACTCAGACAGGT
ACTTACCATCTAAATTTCCACACCTTTCTGAAGCATATAATCTTACTGTC
TACATTCAGTGGATGAGAAAAAGACTCAGCTTCAGAGAAGGTAAATAATG
TGCCCAAATTTACGCAGCTACTGGAAATCCTAGGCAAAG
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAAGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGCAGGGCATCATCC
TGAGTGAGGTTACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGTTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_o09.b1 MSMg01no509_o09.b1 CHROMAT_FILE:
MSMg01no509_o09.b1 PHD_FILE: MSMg01no509_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:18 2005
         (604 letters)



>mm_chr13_111467411_111468414
          Length = 1004

 Score = 1046 bits (541), Expect = 0.0
 Identities = 590/607 (97%), Gaps = 4/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcagaaccaattcttccctggagttcatactctctgttgctaaatataatagcaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcagaaccaattcttccctggagttcatactctctgttgctaaatataatagcaacaa 260

                                                                       
Query: 61  atatttgctattaaatcaccatagcaatataatactatatctaagaatagaaggtacaca 120
           ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 261 atatttgctattaaatcactatagcaatataatactatatccaagtatagaaggtacaca 320

                                                                       
Query: 121 gtaatatactacactacactaagtatgcaaggacagtggt-gttttgataggtatgtttg 179
           || ||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||
Sbjct: 321 gtgatatactacactacactaagtatgcgaggacagtggtagttt-gataggtgtgtttg 379

                                                                       
Query: 180 ccatagtcttgtgtg--aattcttggctaatagagagtggcactattaggaggtgtggct 237
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatagtcttgtgtgtgaattcttggctaatagagagtggcactattaggaggtgtggct 439

                                                                       
Query: 238 ttgtttttttaggtatggccttattgcaggaaatatgtcactgtaggggtgggctttgag 297
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtttgagtaggtatggccttattgcaggaaatatgtcactgtaggggtgggctttgag 499

                                                                       
Query: 298 gtctatgctcatgctccacctagtgtgggactcagtctccttctgaccaagatgtacaac 357
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 500 gtctatgctcatgctccacctagtgtaggactcagtctccttctgaccaagatgtagaac 559

                                                                       
Query: 358 tctcagttcactctccagcaccatgtctgcctgcacacggtcatgcttcctgccatggtg 417
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 560 tctcagttcactctccagcaccatgtctgcctgaacacggtcgtgcttcctgccatggtg 619

                                                                       
Query: 418 agaatggactaagcttttctgtaccagcacccatcaaatggtgtgctttataggagctgc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaatggactaagcttttctgtaccagcacccatcaaatggtgtgctttataggagctgc 679

                                                                       
Query: 478 tatggtcctggtgtctcttcacagagtgaaaccctaactcagacaggtacttaccatcta 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatggtcctggtgtctcttcacagagtgaaaccctaactcagacaggtacttaccatcta 739

                                                                       
Query: 538 aatttccacacctttctgaagcatataatcttactgtctacattcagtggatgagaaaaa 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aatttccacacctttctgaagcatataatcttactgtctacattcagtggatgagaaaaa 799

                  
Query: 598 gactcag 604
           |||||||
Sbjct: 800 gactcag 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)