BAC Information

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BAC

Clone NameMSMg01-510A02
Chromosome13 (Build37)
Map Location 114,849,429 - 114,849,681
singlet/doubletsinglet
Overlap geneArl15
Upstream geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneA430090L17Rik, Ndufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510A02.T7 (MSMg01no510_a02.b1)MSMg01-510A02.TJ (MSMg01no510_a02.g1)
ACCAG583545AG583546
length740724
length of high quality
(start - end)
260 (54 - 313)162 (152 - 313)
definitionCHROMAT_FILE: MSMg01no510_a02.b1 PHD_FILE: MSMg01no510_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:27 2005CHROMAT_FILE: MSMg01no510_a02.g1 PHD_FILE: MSMg01no510_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCTTGTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAG
AGGATCCGCGGAATTCTCCTCTTGCCGGCATTAAGGCTTATAACCCAAAG
GAATGGCCACAAGAACTGCTTTCTCTTTAGCCCGTGAGAGGGAACTCAGG
CAGCACCAGGCTGATTTGTTTCAGGAACAATGATCAATAAGATAATCATC
ATATTACTAAGGCTCAGGACTTCATAAAGTCAAACACAGTAAATACAAGA
TAATGTACACTGTCAGCTTGCTCTACCAAGAGTGAGTTCTCAGGTCTGGG
GGACATCAGAGCAATCTCCTAAACTCAGTTTAGTGATGTCCCAACAGTTT
TCAGGCAATCAAGGGCTTTCTTACCAAAAAAGCAAATGAAAAAGGTTTAT
CTTTCGAAATCCCCAAATCCCCCTTCTGGGAAAAGGAAGGGGAGAAAAAA
AAAAAAAACTCCTGAATTGAACAGGAAAAATGGAATCTCTTTCCTTTCTT
CCTCTAAGTTTCTCTTTTTTCCCCTCTTTCCTTATGTTTTATTAAANTAC
TCTCCCCTCCCCCCGGGGAGGGAAAAAAAGGGGAAAACAACAGTGTTTGC
GATCATCGGGGGTTTCCCTATGGTATAAAAACAAAAAATTTTTTTTTTTT
TCCTCCCCCATATTGAAAAAAAAAGGGTTTCTCTCCTCCTAAAACAAAAA
CACTGGTGCCCCCTTTTAAATAAAAAAAATTATCTCTATN
ATATTCCCAATGATGTGNGAGGCCTGGNGGCCGCCTGGTTTCCCACCTTA
GGTGAACTANACAAGGTTCCACAAACATCCACTGAGNACAGAGCTCATAG
CAGTTTTGTCAAAAGTACATGGGAATTGGCGACAAGCTAACCATCAATCC
CATGTTCCTACCGGAATAGAGTGTGCAAGCCACACTTATTCTAGCATGGT
GGTTATCAACCTTTCTAATGCTGCGACCCCTTAATACAGTCCCTCATGCT
GTTGTGACTCCCAGCCATAGAATTAATTTCATTGCTCCTTCCTAAGTATA
ATTTTCCTGTTGTTATGATTCTTTTTTTTTCTGATGGTCTGAGGTGACCC
CGGTAAAAGCGTCTTTGGCCACCAAGGGAGTCACAGCCCACAGGTTGAGA
ACAACTGTTCTATTTGTTTTCAGTGTCAATTGCTAGACTTCTGCTTGCCT
CAAACTAAGGGTTGAGAACTTGGGCTTTAATTTTGACCATTGATAAAAAT
ACGAAGGGAAACTTTCAGGTTTTAAATGTTTTCACCCGCTCAGAAATGGG
GGCAGGGCGGAGCATAAAACTTGCCATGGTATTACCACTCTCAGCAACTT
TGAATGTGTGGACTATGTCTTAGGTAGGTTATAAGGAAGGGCTCTAACGA
GGCTCTAGCCTGGAGCCGCTTTAAATGCCACGTAATGATTGATAACCTTC
AGATGCAGGTACCACAGGTTCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_a02.b1 MSMg01no510_a02.b1 CHROMAT_FILE:
MSMg01no510_a02.b1 PHD_FILE: MSMg01no510_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:27 2005
         (260 letters)



>mm_chr13_114849222_114849881
          Length = 660

 Score =  451 bits (233), Expect = e-131
 Identities = 248/253 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctcctcttgccggcattaaggcttataacccaaaggaatggccacaagaactgct 67
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaattctcctcttgtcggcattaaggcttataacccaaaggaatggccacaagaactgct 401

                                                                       
Query: 68  ttctctttagcccgtgagagggaactcaggcagcaccaggctgatttgtttcaggaacaa 127
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttctctttagcccgagagagggaactcaggcagcaccaggctgatttgtttcaggaacaa 341

                                                                       
Query: 128 tgatcaataagataatcatcatattactaaggctcaggacttcataaagtcaaacacagt 187
           ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 340 tgatcaatacgataatcatcatattactaaggctcaggacttcattaagtcaaacacagt 281

                                                                       
Query: 188 aaatacaagataatgtacactgtcagcttgctctaccaagagtgagttctcaggtctggg 247
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 280 aaatacaagataatgtacactgtcggcttgctctaccaagagtgagttctcaggtctggg 221

                        
Query: 248 ggacatcagagca 260
           |||||||||||||
Sbjct: 220 ggacatcagagca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)