BAC Information

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BAC

Clone NameMSMg01-510L22
Chromosome13 (Build37)
Map Location 63,099,627 - 63,100,194
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510L22.T7 (MSMg01no510_l22.b1)MSMg01-510L22.TJ (MSMg01no510_l22.g1)
ACCAG584109AG584110
length770807
length of high quality
(start - end)		568 (75 - 642)49 (77 - 125)
definitionCHROMAT_FILE: MSMg01no510_l22.b1 PHD_FILE: MSMg01no510_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:24 2005CHROMAT_FILE: MSMg01no510_l22.g1 PHD_FILE: MSMg01no510_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCG
CGGAATTCCTAAGTCCTTACATTGAATAGCATTCCCAGTCTTAGAGAAGT
AAATGAATCCTCATCCACACATTCTAAATGACATGGTAGAGTCAAAGGGG
ACACACAGCAAATGTGTAAAAAGAATGCAAACAATAACAAAGAGGTGTTG
GGATAGGACGGAGTATTGTATCCGGACTGCTAAGTGGAAATGTGTCAACC
TCAGCATCGGCACTATCCTCTAATGATGATTCAGTTAAGACCTTGCACAC
ACAGGTGTAGAAAGAATTCCCACAAGGCTTCTCCTGACTTAAAGACATGG
GAAATTGAGCAGATGATATTCCTAGAGAGATCCTAGTGTTGTCTCCCATC
TCCCAGTGCTCCTCTGCTATGTAGTCTTTTACCATTTCTGCATCTTGCTA
TAAATATAAAGTCAGGTTCTCTCTCCTTAGATCTTCACTGACCTCTAATT
CTCTCAAAATGATGTCTGGAAGCCCAACACTGAGAGTGGAGACATTCTGT
ATAAAAAATAATGTCAAGAGCTGCAGAGAGGGCTCAGTGGTTAGGAGTAT
TTGTTGCACAATCACAGAGATTATAGTTCACACCCTAGGATCCACATAAG
AAGATGGGCATGTAACTCCAGCTTTGTGGGATCTGATGCCCTTTTCTGAT
TTTTGTGTGTGCACAGGCATGTGCACATATTTACATACATGTATACACAC
TCACAGTGTCTTTATTCGGG

ACCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATACCAAGTGAC
CTATAGAAGGAACTCCAAAAAACACTGCCACATGCTCTGTGCTATAGGTG
TGTGTGTGTGTGTGTGTGTGTGCCGCGTATGAGTGTGTGTGTGTGTATCC
CCTCCGCCCCTCTTTCTCTCTTCTCCCAGCCTACCGTCCCCTCCCCCCCC
TCTGCTTGCTCCACTTACCCTCTCACCACAACTCACCACCAAAACATCAC
CCCCTTCTATAAACACACACCATAATACTACCACAACCCCACACCCCCCC
CCCAAAACCCCCACACCCAAACTATCCTCACTTCACAAAAACCAAACACC
CCACCACCACAACAATCACCCCCCCCACACACATCAACATTAAATACAAC
AACTTCAATCATATAAATCATACCCCCTACCCAAAACACAAACAACCTCA
CACCCACCAACACACAATACAATCCACCAACAAACACCAAACACCACAAC
ATAACCACCAAAATCACCCCCCCATCACACTACCCAACCCAACAACCACT
CCAAAAAAACCACCCAACACCCCACCAAAACCATTAATCCCCCCCCCCAA
CACCCTAAAAAATACCACACCTCCTCCCAAAACCCCCAACCCCAAACAAA
TAACCCATACCCATTCCCACACAGTTCTCCCCCCCACCAAAACACCACCA
AACAAAAAAACCCAACACTTACCCAACCCCCCAACCAAAAATTCCACAAA
CACACCCCCCTAAAACTCCACCATCACACCATCCACACATCCAACCACCA
CTACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_l22.b1 MSMg01no510_l22.b1 CHROMAT_FILE:
MSMg01no510_l22.b1 PHD_FILE: MSMg01no510_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:24 2005
         (568 letters)



>mm_chr13_63099427_63100394
          Length = 968

 Score = 1060 bits (548), Expect = 0.0
 Identities = 563/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatagcattcccagtcttagagaagtaaatgaatcctcatccacacattctaaatgacat 60
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aatagcattcccagtcttagaaaagtaaatgaatcctcatccacacattctaaatggcat 260

                                                                       
Query: 61  ggtagagtcaaaggggacacacagcaaatgtgtaaaaagaatgcaaacaataacaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagagtcaaaggggacacacagcaaatgtgtaaaaagaatgcaaacaataacaaagag 320

                                                                       
Query: 121 gtgttgggataggacggagtattgtatccggactgctaagtggaaatgtgtcaacctcag 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttgggataggacagagtattgtatccggactgctaagtggaaatgtgtcaacctcag 380

                                                                       
Query: 181 catcggcactatcctctaatgatgattcagttaagaccttgcacacacaggtgtagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcggcactatcctctaatgatgattcagttaagaccttgcacacacaggtgtagaaag 440

                                                                       
Query: 241 aattcccacaaggcttctcctgacttaaagacatgggaaattgagcagatgatattccta 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcccacaaggctcctcctgacttaaagacatgggaaattgagcagatgatattccta 500

                                                                       
Query: 301 gagagatcctagtgttgtctcccatctcccagtgctcctctgctatgtagtcttttacca 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagatcctagtgttgtctcccatctcccagtgctcctctgctatgtagtcttttacca 560

                                                                       
Query: 361 tttctgcatcttgctataaatataaagtcaggttctctctccttagatcttcactgacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttctgcatcttgctataaatataaagtcaggttctctctccttagatcttcactgacct 620

                                                                       
Query: 421 ctaattctctcaaaatgatgtctggaagcccaacactgagagtggagacattctgtataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaattctctcaaaatgatgtctggaagcccaacactgagagtggagacattctgtataa 680

                                                                       
Query: 481 aaaataatgtcaagagctgcagagagggctcagtggttaggagtatttgttgcacaatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaataatgtcaagagctgcagagagggctcagtggttaggagtatttgttgcacaatca 740

                                       
Query: 541 cagagattatagttcacaccctaggatc 568
           ||||||||||||||||||||||||||||
Sbjct: 741 cagagattatagttcacaccctaggatc 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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