Query= MSMg01no511_d17.b1 MSMg01no511_d17.b1 CHROMAT_FILE:
MSMg01no511_d17.b1 PHD_FILE: MSMg01no511_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:02 2005
(649 letters)
>mm_chr13_38280740_38281789
Length = 1050
Score = 810 bits (419), Expect = 0.0
Identities = 457/473 (96%), Gaps = 7/473 (1%)
Strand = Plus / Minus
Query: 9 tcacagcaattctcctgcctcagtcactagcagttataattccaccgatttacatcatca 68
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcacagcaatactactgcctcagtcactagcagttataattccaccgatttacatcatca 408
Query: 69 gattatttcaaagaatctctcacaaaggcccttaacaataatcagttaatattgttaata 128
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gattatttcgaagaatctctcacaaaggcccttaacaataatcagttaatattgttaata 348
Query: 129 aatgaaatatgttc-ttttttttcacagagtgctaacctaatgaataaagactagctctt 187
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aatgaaatatgttcattttttttcacagagtgctaacctaatgaataaagactagctctt 288
Query: 188 tccacagggatatttccaaagtgcaacgaagtaaaataaacgggacccaaactcttggcc 247
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tccacagggatatttccaaagtgcaatgaagtaaaataaacgggacccaaactcttggcc 228
Query: 248 atttagaactgtaaaccttggggatggagaaatggcttagccgttaagagcactagctgt 307
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 227 atttagaactgtaaaccttggggatggagaaatggcttagccgttaag------agctgt 174
Query: 308 acttccaaaggaaccagttcagttcccagcacccacatggcagctcacaactgtctgtaa 367
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 173 tcttccaaaggaaccagttcagttcccagcacccacagggcagctcacaactgtctgtaa 114
Query: 368 ctccagtccaagagatctgatattctcacacaatcctacaagcaggcagaacaccaaatg 427
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 113 ctccagtccaagagatctgatattctcacacaatcatacaagcaggcagaacatcaaatg 54
Query: 428 cacatacaatataaataaattatttctaaaaagaagtgtgagtcttgaatggc 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cacatacaatagaaataaattatttctaaaaagaagtgtgagtcttgaatggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space: 664560
Effective search space used: 664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_d17.g1 MSMg01no511_d17.g1 CHROMAT_FILE:
MSMg01no511_d17.g1 PHD_FILE: MSMg01no511_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:02 2005
(427 letters)
>mm_chr13_38237559_38238385
Length = 827
Score = 795 bits (411), Expect = 0.0
Identities = 420/423 (99%)
Strand = Plus / Plus
Query: 1 cttagccttctctccactgatgttgtgtgtacaggaactcacacgcttttataatcagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttagccttctctccactgatgttgtgtgtacaggaactcacacgcttttataatcagga 260
Query: 61 agaaaaacgttctccaagttcaggtttatctaagataactgatttactgatttgttaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaacgttctccaagttcaggtttatctaagataactgatttactgatttgttaatt 320
Query: 121 gggttcttgactctaactggggtttgctgcttggctcacaggttgggaatttaggcagtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggttcttgactctaactggggtttgctgcttggctcacaggttgggaatttaggcagta 380
Query: 181 acttttgcatggggtttccttcctggggaaaattctcaggaccctaggttaggcgcctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttttgcatggggtttccttcctggggaaaattctcaggaccctaggttaggcgcctca 440
Query: 241 gttgcaatgctcccccacccccagctgagatatttagatgctcacttcttgtgttttata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgcaatgctcccccacccccagctgagatatttagatgctcacttcttgtgttttata 500
Query: 301 accactgctggttggttgttcttattttgtctcctgctttcagtgtcaaaatagtcggac 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcactgctggttggttgttcttattttgtctcctgctttcagtgtcaaaatagtcggac 560
Query: 361 ttagcatttggtcattttcctctttctttagtctcccagatgccagtgtttctgtggtgg 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggatttggtcattttcctctttctttagtctcccagatgccagtgtttctgtggtgg 620
Query: 421 ggg 423
|||
Sbjct: 621 ggg 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
