Query= MSMg01no511_e17.b1 MSMg01no511_e17.b1 CHROMAT_FILE:
MSMg01no511_e17.b1 PHD_FILE: MSMg01no511_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:07 2005
(666 letters)
>mm_chr13_118192689_118193759
Length = 1071
Score = 1100 bits (569), Expect = 0.0
Identities = 642/669 (95%), Gaps = 8/669 (1%)
Strand = Plus / Plus
Query: 5 gaattctgttgttatacagatatatttataatttttt-ccctgagagtcttatattgcat 63
|||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 205 gaattctgttgttatatagatatatttat-attttttcccctgagagtcttatattgcat 263
Query: 64 cttagaatgcaagaaacagaagccgatcttgaatagcatggaatcag-----ctgattct 118
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 264 cttagaatgcaagaaacagaagccgatcttgaatagcacggaatcagtttatctcattct 323
Query: 119 attgtccaagaggtcacaatccagccaagtacaaaggaaaggacagactccattgtttag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attgtccaagaggtcacaatccagccaagtacaaaggaaaggacagactccattgtttag 383
Query: 179 tgaagaagactcttggtgattggtgagaaggaattgatggggacttaggaaggtgagagt 238
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaggaggctcttggtgattggagagaaggaattgatggggacttaggaaggtgagagt 443
Query: 239 aaactaataaatttacaggttgtaagcaatgtcagtttgcaaatgagatttacatatctg 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 aaactaataaatttacaggttgtaagcaatgttagtttgcaaatgagatttacatatctg 503
Query: 299 agaaagatagtgagtcttcaggttacctctgctccatctaagcagacttcaagaagtcgg 358
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 504 agaaacatagtgagtcttcaggttacctctgctccatctaagcaggcttcgagaagtcgg 563
Query: 359 aatactagaatagtccaaaattggattgatgattttcatataacttgaaacatgtgctgt 418
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 agtactagaatagtccaaaattggattgatgattttcacataacttgaaacatgtgctgt 623
Query: 419 ttattattcttatgttttaggtgctagtagaattttgttactattatttgtttttccact 478
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttattattcctaagttttaggtgctagtagaattttgttactattatttgtttttccact 683
Query: 479 tattccaaataaaatttaagatttgtaaacatttatttattggtatgtattgattgtgtg 538
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 684 tattccaaataaaacttaagatttgtaaacatttatttattgatatgtattgattgtgtg 743
Query: 539 tatgcatgtgtatgtgcatatatgtatatttgagtgtgtgtatgcatgtgtat-tatgta 597
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 744 tatgcatgtgtatgtgcatatatgtatatttgagtgtgtgtatgcataagtatatatgta 803
Query: 598 tgtgcatgtgtgtgtatgtatgtgtgtgttatcttattgctttgttactctatgttttca 657
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgtgcatgtgtatgtatgtatgtgtgtgttatcttattgctttgttactctatgttttca 863
Query: 658 tataatgtt 666
|||||||||
Sbjct: 864 tataatgtt 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1071
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1061
Effective search space: 696016
Effective search space used: 696016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_e17.g1 MSMg01no511_e17.g1 CHROMAT_FILE:
MSMg01no511_e17.g1 PHD_FILE: MSMg01no511_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:07 2005
(512 letters)
>mm_chr13_118342150_118343061
Length = 912
Score = 936 bits (484), Expect = 0.0
Identities = 505/512 (98%)
Strand = Plus / Minus
Query: 1 tgtctcagcactctgaccttaagagcatcactaagacttagcaaagttgaatatgtcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgtctcagcactctgaccttaagagcatcactaagacttagcaaagttgaatatgtcaga 653
Query: 61 ctaagggcgcaacaggatgtgagaaaatggaggaatctaagaagaaacactgagagaaaa 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctaaggacgcaacaggatgtgagaaaatggaggaatctaagaagaaacactgagagaaaa 593
Query: 121 ttcccactgagtgctccaggtgacattagtatcctgaagtgacaagatcagactaatagt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttcccactgagtgttccaggtgacattagtatcctgaagtgacaagatcagactaatagt 533
Query: 181 cccaaaaggaatcatacaagacgtgtgtttcaaaaacctagagtatttatagcaaaaggc 240
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 532 cccaaaaggaatcatacaagacgtgtgtttcaaaagcctagagtatttatagcagaaggc 473
Query: 241 atctaagatgtgcatgtgttctggaaagtaccgtcacctaatcttgtactcaaaagtgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atctaagatgtgcatgtgttctggaaagtaccgtcacctaatcttgtactcaaaagtgga 413
Query: 301 agcaaatagatcatgtaccataagccttcagaatatattattgtttcatacaaatacaag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agcaaatagatcatgtaccataagccttcagaatatattattgtttcatacaaatacaaa 353
Query: 361 ctaactcagaccaagtagagtagacattcttttaaaattgctaatctttcttacaaacag 420
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 352 ctaactcagaccaagtagagtagacattattttaaaattgctaatccttcttacaaacag 293
Query: 421 aattgaattaaatgttagtatgtaataatttttatttcttagttcaccttgcttatgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aattgaattaaatgttagtatgtaataatttttatttcttagttcaccttgcttatgaaa 233
Query: 481 attggacaagatataatttataatctgataat 512
||||||||||||||||||||||||||||||||
Sbjct: 232 attggacaagatataatttataatctgataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
