BAC Information

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BAC

Clone NameMSMg01-511H22
Chromosome13 (Build37)
Map Location 3,788,503 - 3,788,909
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13
Downstream geneCalml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511H22.T7 (MSMg01no511_h22.b1)MSMg01-511H22.TJ (MSMg01no511_h22.g1)
ACCAG584677AG584678
length755765
length of high quality
(start - end)
587 (44 - 630)473 (72 - 544)
definitionCHROMAT_FILE: MSMg01no511_h22.b1 PHD_FILE: MSMg01no511_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:23 2005CHROMAT_FILE: MSMg01no511_h22.g1 PHD_FILE: MSMg01no511_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGCATTTCAGTGGGGCTGAGTTGTCAACAGAGGGAGAGTGGACTT
AACAGAACCAGAACCAGAAGAGAAAGAAGACGTCAAAAATAACAAGAACC
CTGAGGACAATAGGGTGTAAGGACACTTGATCCACACATCAATATTCAGC
CAGGACAGACAGGTAGTGGGAGATTCGCATGAAGTGAAAGGCATCAGATT
TGTCTCATTATGCACAAGTTGCCGTATGGAATACCAAGAAGAGAGCAGTT
TAAACAGTAGACAGTCATTCTCACAGTTCAAATGTCTGACACACCCAAGG
TTAAGGTACTAGAGGATTTGGTCTCTAGTCAAAACTGTCTTCCTGGCTTG
AGACCACTGTTGTTTGACCTTTGCTTCTGGGGGCAGAAAGAAAACAAAGT
CTCATTTGCATCTTCTAAGACCGTCATTAACCTTTGTAGATTAGAACCCC
ATTCTTATAATCCTCAGTGAACCCTAATTGCCTCAATAAAGGCACTAAAT
ACAGTTAAGATGGAGTTAGGATAAAATAGGTAAATATGGGGGAGCATACA
CAGTTAAATCAAAGCAGAGACCCATCAATTCACAAAGTTAACGAGTTGAC
TGGGCCTGTAAGGTTCTTTGCTAAGCAACACAAGAGACTCAGTTTGACTT
CCAGAGACCACATGAAAAAAGCAGGTTGGTTTGGTGGTGCACACTTGTTA
TCTCC
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAGATACTGCTGGAAGCCCCTTAGAGT
TTTCATACAGTTCTTAGATTAAGAGGGATGTGAAGGCAAAAACACAGGAA
AACCCCACAACAGTTTTCAAGAAGTCTTCAGGACATGTAGTCTCCCACCC
CCACCCCTCCCCCCACCCCTCCGTGCCGGTCTAAGGCACACCCATAGTGA
TTGAGCTGGGCTGCATTCCAAGAGTTGTTCCTCCTGCATGACCCTTGACA
CTCCTACTTTGGTGCAAAACATTGAATACTCTTAAGAAGACAGTGCCTCC
CCACCGACCTATAGGTTGTTAAATGCACTCTTGAACAAAATCCCAACTGA
TTTTTCTGATGGTCAAAATAAGCAATCTGATCTTATAATTCAGGTGAATG
CTACAGTTCTAATATAGCTATAAAAACATCATGAAAGAATGAAGTTGACT
TGCATTTCTTGATTTCTGAATTTATTACAAAGTTATGGTAGAGAATGAAG
TAAGAAAGATAAGGTAGAGGAGGGGTGGAGTAAATGTTCTCACCCCCCAT
CCGGGCCNATTTTGATCCCCCTTTTTCCGCGTACTTTCTCAAAAAATTTA
TTTTCTCCCCATTCCCCTTCTTCGCTCTTTTTTTTCCATCATAATTCACT
GTTGTTTTTTCTTGTTACCGACAGCGTTTTCTCATCCCTTCCTTTTCTAC
CCCCCTAGTTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_h22.b1 MSMg01no511_h22.b1 CHROMAT_FILE:
MSMg01no511_h22.b1 PHD_FILE: MSMg01no511_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:23 2005
         (587 letters)



>mm_chr13_3788503_3789489
          Length = 987

 Score =  770 bits (398), Expect = 0.0
 Identities = 406/410 (99%), Gaps = 3/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 21  agtggggctgagttgtcaacagagggagagtggacttaacagaaccagaaccagaagaga 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agtggggctgagttgtcaacagagggagagtggacttaacagaaccagaaccagaagaga 348

                                                                       
Query: 81  aagaagacgtcaaaaataacaagaaccctgaggacaatagggtgtaaggacacttgatcc 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aagaagacgtcaaaaataacaagaaccctgaggacaatagggtgtaaggacacttgatcc 288

                                                                       
Query: 141 acacatcaatattcagccaggacagacaggtagtgggagattcgcatgaagtgaaaggca 200
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 acacatcaatattcacccaggacagacaggtagtgggagattcgcatgaagtgaaaggca 228

                                                                       
Query: 201 tcagatttgtctcattatgcacaagttgccgtatggaataccaagaagagagcagtttaa 260
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcagatttgtctc---atgcacaagttgccgtatggaataccaagaagagagcagtttaa 171

                                                                       
Query: 261 acagtagacagtcattctcacagttcaaatgtctgacacacccaaggttaaggtactaga 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acagtagacagtcattctcacagttcaaatgtctgacacacccaaggttaaggtactaga 111

                                                                       
Query: 321 ggatttggtctctagtcaaaactgtcttcctggcttgagaccactgttgtttgacctttg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggatttggtctctagtcaaaactgtcttcctggcttgagaccactgttgtttgacctttg 51

                                                             
Query: 381 cttctgggggcagaaagaaaacaaagtctcatttgcatcttctaagaccg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  cttctgggggcagaaagaaaacaaagtctcatttgcatcttctaagaccg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)