Query= MSMg01no511_k19.b1 MSMg01no511_k19.b1 CHROMAT_FILE:
MSMg01no511_k19.b1 PHD_FILE: MSMg01no511_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:36 2005
(316 letters)
>mm_chr13_35434076_35434790
Length = 715
Score = 485 bits (251), Expect = e-141
Identities = 271/283 (95%), Gaps = 12/283 (4%)
Strand = Plus / Minus
Query: 5 gaattctctttgcta-tcgttaacaaccaattatgtcacactatcaaccttcaagaaaac 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaattctctttgctagt-gttaacaaccaattatgtcacactatcaaccttcaagaaaac 378
Query: 64 cactttaatacagggttaaacacaaagtgcaaggggctaacccagggatggaggatagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cactttaatacagggttaaacacaaagtgcaaggggctaacccagggatggaggatagtg 318
Query: 124 agatcttgtggcacattgtccatctcagtgattttaacttctgccactgtttaggattat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agatcttgtggcacattgtccatctcagtgattttaacttctgccactgtttaggattat 258
Query: 184 tggtgctgtgtgtcagggcagcctgttgttctctgccagagagtattcaaattttctctc 243
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 257 tggtgctgtgtgtcagggcagcctgttgttctctgccagagagt-ttcaaatt------- 206
Query: 244 tctctctctctctctctctttcttttttttttttttttttttt 286
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 --tctctctctctctctctttcttttttttttttttttttttt 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 715
Length adjustment: 9
Effective length of query: 307
Effective length of database: 706
Effective search space: 216742
Effective search space used: 216742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_k19.g1 MSMg01no511_k19.g1 CHROMAT_FILE:
MSMg01no511_k19.g1 PHD_FILE: MSMg01no511_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:36 2005
(550 letters)
>mm_chr13_35270636_35271585
Length = 950
Score = 1056 bits (546), Expect = 0.0
Identities = 549/550 (99%)
Strand = Plus / Plus
Query: 1 ttacccagtgctgccagagtttggtctattggtacaacatgtatgataccagtgactact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacccagtgctgccagagtttggtctattggtacaacatgtatgataccagtgactact 260
Query: 61 tgtcctctgtgacaagcctgtctagaagtattgacattacccaacagatgggcagtggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcctctgtgacaagcctgtctagaagtattgacattacccaacagatgggcagtggtg 320
Query: 121 gcccatgtacatttgaagaaacataaacaacaacatcaaaacacatactagatttgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccatgtacatttgaagaaacataaacaacaacatcaaaacacatactagatttgatgg 380
Query: 181 cttgtgttttaacgtgacaaaatctagaatcatctggcaggtggactctaatagtgctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtgttttaacgtgacaaaatctagaatcatctggcaggtggactctaatagtgctgt 440
Query: 241 gggcattaccctaatgacatcaattgagatgagaagtcctgcccactgttggcatcacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcattaccctaatgacatcaattgagatgagaagtcctgcccactgttggcatcacca 500
Query: 301 tcccctaagcaggacactctaggctgtataggagtgatgaaaggaagctgaggactaaca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tcccctaagcaggacactctaggctgtataggagtgatgaaaggaagctgagcactaaca 560
Query: 361 tgcaaggatgcactcattgttctctgcccataactatgggtgtgatgtgaccagtgccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcaaggatgcactcattgttctctgcccataactatgggtgtgatgtgaccagtgccct 620
Query: 421 cagactgctgccactgagagactccaagttgtaactgtaggctaaaataaaattcttttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagactgctgccactgagagactccaagttgtaactgtaggctaaaataaaattcttttc 680
Query: 481 tctaaagttgctttagtcagaatatcttgagttagaacagtttattttagaaccaaggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaaagttgctttagtcagaatatcttgagttagaacagtttattttagaaccaaggga 740
Query: 541 aaaagaaaac 550
||||||||||
Sbjct: 741 aaaagaaaac 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
