Query= MSMg01no512_d11.b1 MSMg01no512_d11.b1 CHROMAT_FILE:
MSMg01no512_d11.b1 PHD_FILE: MSMg01no512_d11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:17 2005
(631 letters)
>mm_chr13_53959079_53960109
Length = 1031
Score = 1145 bits (592), Expect = 0.0
Identities = 619/628 (98%)
Strand = Plus / Plus
Query: 4 ggaattcatcgtatcatcaaggatgctacattgtccaatttcatacaggtttttatcgtt 63
||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcgtcggaacatcaaggatgctacattgtccaatttcatacaggtttttatcgtt 263
Query: 64 gaaataaatcactacacaatagaaaatagcacacccaaagctttatggttgtatcgccat 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 gaaataaatcactacacaatagaaaatagcacacccaaagctttatggtcgtatcgccat 323
Query: 124 cagtacaacgtgtctatcttagcagttgtcaaagtagcagatgacagtaacataggtcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtacaacgtgtctatcttagcagttgtcaaagtagcagatgacagtaacataggtcag 383
Query: 184 actctaagataaattctttttattaagtctgtttattttacattttaggagaggaatgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actctaagataaattctttttattaagtctgtttattttacattttaggagaggaatgtt 443
Query: 244 ccaggaccacattctaaatatgtgtgccatctgctctgaaaactgacctgagtctacgtg 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 ccaggaccacattctaaatatgtgtgccatctgctctgaaagctgacctgagtctacgtg 503
Query: 304 aagtgaagtaacatctgtcctccagatgttcatatgataggagaattaatatttaaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagtgaagtaacatctgtcctccagatgttcatatgataggagaattaatatttaaaatt 563
Query: 364 ctaggatccatggaaaagtcacaaaagtgcaatcaaatgaagtaaagcaagccagagatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctaggatccatggaaaagtcacaaaagtgcaatcaaatgaagtaaagcaagccagagatt 623
Query: 424 tcagaagcccctgggttatgacttctgacactgcaccaggacacctgggacgggtttccg 483
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagaagcccctgggttataacttctgacactgcaccaggacacctgggacgggtttccg 683
Query: 484 gcagaaggacgtgtgtggaacacaacacccttggcttctgatctacagagaatttaaggg 543
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 gcagaaggatgtgtgtggaacacaacacccttggcttctgatctacagagaacttaaggg 743
Query: 544 ttctttggagtcagttgtgctgcctggtgttttgctgaggcaaacatgtgaaggagtgtt 603
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttctttggagtcagttgtgttgcctggtgttttgctgaggcaaacatgtgaaggagtgtt 803
Query: 604 ttcctgaagtggacacaggtgaaaaggc 631
||||||||||||||||||||||||||||
Sbjct: 804 ttcctgaagtggacacaggtgaaaaggc 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_d11.g1 MSMg01no512_d11.g1 CHROMAT_FILE:
MSMg01no512_d11.g1 PHD_FILE: MSMg01no512_d11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:18 2005
(593 letters)
>mm_chr13_54104908_54105899
Length = 992
Score = 864 bits (447), Expect = 0.0
Identities = 484/497 (97%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 1 caagaccacacaaggaaacagatgaatgaaatgaaaaaaaaaggctatttgggatatgaa 60
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 499 caagatcacacaaggaaacagatgaatgaaatg-aaaaaaaaggctatttgggatatgaa 441
Query: 61 aatagaatttatcaaggggagaggaatattaaagagaaacaagccgaatgatgttgaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatagaatttatcaaggggagaggaatattaaagagaaacaagccgaatgatgttgaaaa 381
Query: 121 tggaaaattcaataagttaagtaaactcagtgaaaagtccctaataggacagatcacgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggaaaattcaataagttaagtaaactcagtgaaaagtccctaataggacagatcacgtg 321
Query: 181 gaggacagaatgtccagggctgaagacgagctggcgggattggatcactccattaaagtt 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 320 gaggacagaatgtccagggctgaagacgagctggcaggattggatcattccattaaagtt 261
Query: 241 tgaacggaacatgggaaacatttgggacaccagggaaataccaaatgtacaaattatggt 300
|||| |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 260 tgaatggaacatgtgaagcatttgggacaccagggaaataccaaatgtgcaaattatggt 201
Query: 301 gaatactattaatagtaacattaataataatagtaatagtaatgataacaatgataattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaatactattaatagtaacattaataataatagtaatagtaatgataacaatgataattc 141
Query: 361 catgccaaagacattgaaaatgtttccaataaactgataggaaactatttcctgaaccta 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 140 catgccaaagacattgaaaatatttccaataaactgataggaaactatttcctgaaccta 81
Query: 421 aggaaagagatacccgtgctcttagtacatgaggcatacagaacgccaagtcaatatgaa 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 80 aggaaagagatacctgtgctcttagtacatgaggcatacagaacgccaagtcaataagaa 21
Query: 481 gaggaaaaaaaaaaacc 497
||| ||||||||||||
Sbjct: 20 gag--aaaaaaaaaacc 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
