MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-512E08
Chromosome	13 (Build37)
Map Location	99,786,951 - 99,787,341
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik
Downstream gene	LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b, Cartpt, Mccc2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rgnef (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667703 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667703
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Utp15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105372 MGI:2145443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankra2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68558 MGI:1915808
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667718 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667718 MGI:3643284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Btf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218490 MGI:1202875
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Foxd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15229 MGI:1347463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039827 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1341 ESTs, 22 Proteins pseudo : _no_value

name	LOC100039665 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039665
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 64 ESTs, 4 Proteins

name	LOC100039854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC218501 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:218501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 44 ESTs, 11 Proteins pseudo : _no_value

name	Tmem174 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68344 MGI:1915594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380863 MGI:2685751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669675 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Fcho2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218503 MGI:3505790
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnpo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238799 MGI:2681523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG432798 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432798 MGI:3648523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 786 ESTs, 7 Proteins

name	LOC100039771 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039771
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	1700024P04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69382 MGI:1916632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 40 Proteins

name	LOC100039967 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins pseudo : _no_value

name	LOC100039797 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039797
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	Zfp366 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238803 MGI:2178429
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptcd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68927 MGI:1916177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrps27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:218506 MGI:1919064
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtap1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17755 MGI:1306778
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cartpt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27220 MGI:1351330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Mccc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78038 MGI:1925288
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rgnef (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123702009 GeneID:110596 MGI:1346016
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho-guanine nucleotide exchange factor transcript_id : NM_012026.2

name	Utp15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130641 GeneID:105372 MGI:2145443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast) transcript_id : NM_178918.3

name	Ankra2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963688 GeneID:68558 MGI:1915808
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat, family A (RFXANK-like), 2 transcript_id : NM_023472.1

name	EG667718 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395641 GeneID:667718 MGI:3643284
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG667718 transcript_id : XM_992017.1

name	Btf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56605978 GeneID:218490 MGI:1202875
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : basic transcription factor 3 transcript_id : NM_145455.2

name	Foxd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679836 GeneID:15229 MGI:1347463
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : forkhead box D1 transcript_id : NM_008242.1

name	LOC100039665 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264628 GeneID:100039665
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 64 ESTs, 4 Proteins product : similar to protein translocation complex beta subunit transcript_id : XM_001473300.1

name	LOC100039854 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264639 GeneID:100039854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039854 transcript_id : XM_001474039.1

name	Tmem174 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:58037110 GeneID:68344 MGI:1915594
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 174 transcript_id : NM_026685.1

name	Tmem171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71037372 GeneID:380863 MGI:2685751
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 171 transcript_id : NM_001025606.1

name	LOC669675 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149264642 GeneID:669675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC669675 transcript_id : XM_001474101.1

name	Fcho2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328382 GeneID:218503 MGI:3505790
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : FCH domain only 2 transcript_id : NM_172591.2

name	Tnpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115385967 GeneID:238799 MGI:2681523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transportin 1 transcript_id : NM_178716.3

name	Tnpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115385965 GeneID:238799 MGI:2681523
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transportin 1 transcript_id : NM_001048267.1

name	EG432798 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94395601 GeneID:432798 MGI:3648523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 786 ESTs, 7 Proteins product : predicted gene, EG432798 transcript_id : XM_484309.4

name	1700024P04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149264636 GeneID:69382 MGI:1916632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 40 Proteins product : RIKEN cDNA 1700024P04 gene transcript_id : XM_001473501.1

name	Zfp366 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51921300 GeneID:238803 MGI:2178429
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 366 transcript_id : NM_001004149.1

name	Ptcd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130266 GeneID:68927 MGI:1916177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pentatricopeptide repeat domain 2 transcript_id : NM_026873.2

name	Mrps27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50980302 GeneID:218506 MGI:1919064
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial ribosomal protein S27 transcript_id : NM_173757.3

name	Mtap1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678945 GeneID:17755 MGI:1306778
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : microtubule-associated protein 1 B transcript_id : NM_008634.1

name	Cartpt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125628670 GeneID:27220 MGI:1351330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CART prepropeptide transcript_id : NM_001081493.1

name	Cartpt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139948471 GeneID:27220 MGI:1351330
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CART prepropeptide transcript_id : NM_013732.6

name	Mccc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686108 GeneID:78038 MGI:1925288
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methylcrotonoyl-Coenzyme A carboxylase 2 (beta) transcript_id : NM_030026.2

name	Rgnef (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123702010 GeneID:110596 MGI:1346016
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : Rho interacting protein 2; Rho specific exchange factor product : Rho-guanine nucleotide exchange factor protein_id : NP_036156.2

name	Utp15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725776 CCDS:CCDS26712.1 GeneID:105372 MGI:2145443
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 product : UTP15, U3 small nucleolar ribonucleoprotein, homolog protein_id : NP_849249.1

name	Ankra2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963689 CCDS:CCDS26713.1 GeneID:68558 MGI:1915808
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : ankyrin repeat, family A (RFXANK-like), 2 protein_id : NP_075961.1

name	EG667718 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94395642 GeneID:667718 MGI:3643284
definition	codon_start : 1 product : hypothetical protein protein_id : XP_997111.1

name	Btf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56605979 CCDS:CCDS26714.1 GeneID:218490 MGI:1202875
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : basic transcription factor 3 protein_id : NP_663430.2

name	Foxd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679837 GeneID:15229 MGI:1347463
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : HNF-3/forkhead homolog, brain factor 2 product : forkhead box D1 protein_id : NP_032268.1

name	LOC100039665 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264629 GeneID:100039665
definition	codon_start : 1 product : similar to protein translocation complex beta subunit protein_id : XP_001473350.1

name	LOC100039854 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264640 GeneID:100039854
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474089.1

name	Tmem174 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037111 CCDS:CCDS26715.1 GeneID:68344 MGI:1915594
definition	codon_start : 1 product : hypothetical protein LOC68344 protein_id : NP_080961.1

name	Tmem171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037373 CCDS:CCDS26716.1 GeneID:380863 MGI:2685751
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 171 protein_id : NP_001020777.1

name	LOC669675 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149264643 GeneID:669675
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474151.1

name	Fcho2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369848 GeneID:218503 MGI:3505790
definition	GO_process : GO:0051301 - cell division [Evidence IEA] codon_start : 1 product : Fcho2 protein_id : NP_766179.1

name	Tnpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115385968 CCDS:CCDS26717.1 GeneID:238799 MGI:2681523
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; karyopherin (importin) beta 2 product : transportin 1 isoform 1 protein_id : NP_848831.2

name	Tnpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115385966 GeneID:238799 MGI:2681523
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; karyopherin (importin) beta 2 product : transportin 1 isoform 2 protein_id : NP_001041732.1

name	EG432798 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82951993 GeneID:432798 MGI:3648523
definition	codon_start : 1 product : similar to ribosomal protein L27A protein_id : XP_484309.2

name	1700024P04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149264637 GeneID:69382 MGI:1916632
definition	codon_start : 1 product : histone variant H2bl1 protein_id : XP_001473551.1

name	Zfp366 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51921301 CCDS:CCDS26720.1 GeneID:238803 MGI:2178429
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger protein 366 protein_id : NP_001004149.1

name	Ptcd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037131 CCDS:CCDS26721.1 GeneID:68927 MGI:1916177
definition	codon_start : 1 product : pentatricopeptide repeat domain 2 protein_id : NP_081149.1

name	Mrps27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50980303 CCDS:CCDS26722.1 GeneID:218506 MGI:1919064
definition	GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 product : mitochondrial ribosomal protein S27 protein_id : NP_776118.2

name	Mtap1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678946 CCDS:CCDS26723.1 GeneID:17755 MGI:1306778
definition	GO_component : GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence TAS] [Evidence IEA] GO_function : GO:0005519 - cytoskeletal regulatory protein binding [Evidence TAS] [Evidence IEA] GO_process : GO:0016358 - dendrite development [Evidence IMP]; GO:0001578 - microtubule bundle formation [Evidence IMP]; GO:0007017 - microtubule-based process [Evidence TAS] [Evidence IEA] codon_start : 1 exception : mismatches in translation note : microtubule-associated protein 5 product : microtubule-associated protein 1 B protein_id : NP_032660.1

name	Cartpt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125628671 GeneID:27220 MGI:1351330
definition	GO_function : GO:0005184 - neuropeptide hormone activity [Evidence TAS] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence TAS]; GO:0046850 - regulation of bone remodeling [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; cocaine and amphetamine regulated transcript product : cocaine and amphetamine regulated transcript isoform 2 protein_id : NP_001074962.1

name	Cartpt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:139948472 GeneID:27220 MGI:1351330
definition	GO_function : GO:0005184 - neuropeptide hormone activity [Evidence TAS] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence TAS]; GO:0046850 - regulation of bone remodeling [Evidence IMP]; GO:0007268 - synaptic transmission [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; cocaine and amphetamine regulated transcript product : cocaine and amphetamine regulated transcript isoform 1 protein_id : NP_038760.3

name	Mccc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:73622267 GeneID:78038 MGI:1925288
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0004485 - methylcrotonoyl-CoA carboxylase activity [Evidence IEA] codon_start : 1 product : methylcrotonoyl-Coenzyme A carboxylase 2 (beta) protein_id : NP_084302.1

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 4 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 3 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 2 pseudo : _no_value

name	LOC667703 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667703
definition	number : 1 pseudo : _no_value

name	LOC100039771 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039771
definition	number : 1 pseudo : _no_value

name	LOC100039771 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039771
definition	number : 2 pseudo : _no_value

name	LOC100039797 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039797
definition	number : 5 pseudo : _no_value

name	LOC100039797 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039797
definition	number : 4 pseudo : _no_value

name	LOC100039797 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039797
definition	number : 3 pseudo : _no_value

name	LOC100039797 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039797
definition	number : 2 pseudo : _no_value

name	LOC100039797 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039797
definition	number : 1 pseudo : _no_value

name	LOC100039827 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264638 GeneID:100039827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 mRNAs, 1341 ESTs, 22 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_031521.1

name	LOC218501 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264641 GeneID:218501
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 44 ESTs, 11 Proteins product : similar to calponin 3, acidic pseudo : _no_value transcript_id : XR_031538.1

name	LOC100039967 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149264646 GeneID:100039967
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins product : similar to Ribosomal protein L17 pseudo : _no_value transcript_id : XR_031603.1

clone name	MSMg01-142P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504K06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-519N06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-322J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-335I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246K23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014F18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292D22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125I09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002D07
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-512E08.T7 (MSMg01no512_e08.b1)	MSMg01-512E08.TJ (MSMg01no512_e08.g1)
ACC	AG585270	AG585271
length	892	600
length of high quality (start - end)	---	391 (78 - 468)
definition	CHROMAT_FILE: MSMg01no512_e08.b1 PHD_FILE: MSMg01no512_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:22 2005	CHROMAT_FILE: MSMg01no512_e08.g1 PHD_FILE: MSMg01no512_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:22 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AGGAGGGAGGGCGNNNNATGAAGAGAAGAGGAACCCGTTTCCACCCCGCC CCTTTCTTTCTAAGAGGAAGGAGGGGGCGGTGTCTTCACCAAAAAGGGGA AGGAACGGCTTGAATAAAGAAGAGTCAANCTTTTTCCGCGGGGGAGAGAG GGGGTTCTCTCGGGGAAAAAACCCACCCTCTACATCTCCAGGGGGCGGTT TATATTGGAACGAGTTTTTATAATATATAAAAATAAAAAAATTTTAATGT GTCCCCGTATATTGGGTGGGAAAAATATAACTCTTACCCCGCTCCCGCCG GTTGTACTAACAAAAAAGAAAAAAAATATATGGCCGGCGCGTCTCTTTTC TCCGTTTTTCCCTCCCGCTCAAACATAGATATGCATCAATAGAGCGGGCG GTAAATATGATATTATGAGCGCGGGGTGGTGGGTGCGCGGCTCCTTTTAT CTCTTTAAATCTCAACAGGAAAACACAAACAGAGGAATATTACTACACTC TATATCTTAACCTATCATATACCAGAACTCCGTTTAAAAGAGTATAGATT ACGGCGCAAAATATCTTCCTCCTTACTTCCCCCCCGTTTTGGGGTTGAGT GCCGCGAGTACCGAATCTGCGCGTTCATTTGCCCCTGTTGCTCGCCTTGT CAGAGGGGNNNCNNNNNTTTTCCTTCCATACATAACATAACACATGTGTT TGACGCCCCCCACACGTCGATTATGAAGAGAAAGTACGAAACGTCCACCC TCACCCTACTCCTATATATTAGGTCGGTGTATGTTAGGTAGAGTACGGAC GTTTGGCGTTGGTCCCATCGAGTCCGGGTATGTAGCTATCTATCTTTACG CCAAAATCAAAAAACTCACTAATGTAGGTGAGAGCGAAGAGA	NCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGAGAAGCCCT GTCTTGAAAAAACAAAAACAAACAAAAAAATATGGAATCTCAGCCTTGAT CTCATGTCTCCTTAGTCAGGGTCATCACTCGGATCAGGTTGCCATGGGAA CCTATGGATGTATTTGAGTCTGAAGGGCTCCACTCTGGGTGGTGGGCAGT CTAAGGAGCTGACAGGAGATAATGCTAAGCACCCAGTGAGGTTAGTTAGA GTGGTGGCCACTGACATCAGTACAAGTCAGATATCACAGGAATAAACAGC ATGATAATGTTACCTGACAGTTTTAAAATGTAAGAAAGAAGCAAACACTG TGGGTCTTGCTGCTCTTGTGTTATATTATGAGTGAAAGGTTTTTGGGGCT GGAGAGACAGCTCAGTAGTTGAGAGTATTAGCTGTCTTTTCCAGAGGACC AAGGTTCTGGTTTCCCAGCACTCACACAGTGGGCTCAAAAACCATTATAT TAACTCCCGGTCCCCAGGAAGATAAGAAGTGGCCTTTCTCTGGGCTTTCC
quality values	Open. Hide. 14 14 11 11 9 8 8 8 8 8 8 11 3 0 0 0 0 3 6 6 8 9 6 7 7 7 7 6 8 8 8 8 8 8 7 8 9 9 16 11 10 10 8 8 10 10 8 8 11 19 15 9 9 9 10 8 12 13 11 8 8 8 9 8 8 8 6 8 6 6 8 6 12 12 12 10 10 10 10 10 10 8 7 6 8 8 8 6 6 6 6 8 8 10 10 11 8 6 6 6 6 8 8 8 8 8 8 8 7 7 8 8 8 8 8 11 17 10 8 6 7 6 6 6 8 8 8 3 0 3 10 8 8 8 8 6 6 6 7 6 8 10 9 8 9 10 8 7 7 8 10 8 9 9 10 9 10 9 9 9 9 9 12 24 25 28 31 29 9 10 8 8 8 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 11 10 10 11 10 10 10 10 11 10 10 10 8 6 6 8 6 8 8 10 8 6 6 6 8 9 10 10 9 9 9 9 10 10 13 8 8 8 8 8 8 13 12 15 14 19 15 14 16 16 12 12 10 10 15 12 12 12 12 10 10 8 8 8 8 9 8 8 10 10 8 8 8 8 10 8 10 6 6 6 6 12 15 15 12 7 6 6 6 6 6 10 8 8 8 8 8 8 8 6 6 6 6 6 8 13 10 12 9 13 13 9 9 8 8 8 8 8 8 9 9 9 9 9 10 9 12 13 10 10 10 11 11 13 12 10 8 10 10 8 8 6 8 8 6 6 6 6 8 10 10 10 10 12 15 13 10 11 11 9 10 10 8 8 8 8 8 8 8 8 9 9 9 9 9 10 10 10 10 11 11 11 12 14 12 13 6 6 6 6 8 8 8 8 8 8 8 8 6 6 8 7 7 10 10 8 9 6 8 6 6 6 6 6 8 8 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 10 10 11 11 11 10 13 9 9 9 9 8 8 8 8 8 8 8 8 8 10 10 11 11 11 10 8 8 8 10 8 9 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 7 10 8 8 8 8 9 9 10 11 10 10 10 10 10 8 8 8 8 8 8 10 9 9 8 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 9 9 6 7 7 7 8 6 8 8 9 11 11 9 9 9 8 8 8 8 8 8 9 9 7 10 8 12 8 8 9 9 16 16 13 9 9 10 6 6 6 6 10 7 12 18 16 15 18 12 12 11 9 11 9 11 10 10 9 9 9 10 10 9 9 9 9 9 10 10 8 8 6 6 6 6 8 8 8 8 8 8 10 15 10 10 9 8 8 8 10 12 11 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 6 6 6 8 10 8 8 8 8 8 8 10 10 11 3 0 0 0 3 0 0 0 0 0 3 14 11 9 11 8 8 6 6 8 8 9 9 10 11 13 10 9 9 10 9 9 9 11 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 10 10 13 13 14 8 8 8 8 8 8 8 8 8 8 9 9 8 12 8 9 12 10 10 10 9 9 9 9 9 9 13 9 9 9 10 11 8 8 6 6 6 7 7 6 8 8 10 10 12 11 15 10 8 8 13 8 8 9 9 9 9 9 6 8 6 6 8 8 8 8 6 6 8 8 6 7 8 8 10 11 11 13 8 12 8 8 8 10 10 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 6 8 8 10 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 10 8 8 6 6 6 8 8 8 8 8 8 10 8 6 6 8 8 11 18 11 11 11 12 15 12 12 12 12 11 10 9 9 9 9 9 9 9 9 9 9 9 11 8 8 8 8 8 8 6 8 8 6 8 6 6 8 6 6	Open. Hide. 0 3 8 8 9 12 9 11 10 8 8 8 9 9 18 18 28 28 41 39 39 41 41 39 39 39 39 39 43 27 21 8 8 8 8 8 10 22 21 22 22 28 28 30 29 37 39 47 53 47 42 50 43 47 50 50 53 47 34 21 13 11 9 9 19 19 30 33 42 57 57 47 47 50 50 50 41 41 41 41 48 51 50 50 50 47 54 57 48 48 50 50 50 50 57 48 48 48 57 57 57 57 57 68 68 68 68 68 68 68 51 50 47 47 47 48 57 50 50 50 50 50 57 57 57 57 59 51 51 68 50 50 50 50 51 51 68 57 57 50 50 37 50 50 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 52 57 57 57 57 59 57 57 59 59 59 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 57 57 57 59 57 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 57 57 68 68 68 57 59 52 57 57 57 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 68 68 68 68 57 57 57 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 46 46 43 44 46 57 54 57 57 68 68 59 59 57 57 59 59 59 54 54 54 57 57 54 54 54 54 57 57 68 68 68 68 68 57 57 57 57 54 54 48 48 48 48 48 53 57 57 57 50 50 48 48 48 48 48 48 48 48 48 48 41 50 42 41 44 59 44 41 37 44 44 37 37 41 41 41 41 47 47 50 48 59 48 48 48 57 57 57 57 43 59 48 48 48 48 48 41 46 36 36 33 30 30 25 25 32 37 37 47 47 47 47 48 41 41 41 41 41 41 25 24 13 13 13 26 30 44 37 37 41 41 41 41 37 34 39 37 31 34 33 28 28 32 37 28 29 19 19 29 24 28 19 21 24 24 24 21 19 12 11 15 15 12 12 10 11 6 6 6 7 19 33 31 31 22 19 17 11 10 9 14 10 14 14 17 26 21 13 7 6 6 6 7 7 19 19 16 14 14 16 19 22 19 24 19 14 14 13 15 11 16 10 9 8 12 11 13 13 9 9 9 8 11 8 8 8 10 8 8 10 8 10 8 9 9 9 10 19 16 11 8 8 9 13 10 14 10 11 11 9 8 8 8 8 8 8 8 9 9 9 9 10 10 11 14 14 18 15 9 9 8 8 13 8 8 8 8 8 8 9 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no512_e08.g1 MSMg01no512_e08.g1 CHROMAT_FILE:
MSMg01no512_e08.g1 PHD_FILE: MSMg01no512_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:22 2005
         (391 letters)



>mm_chr13_99786751_99787541
          Length = 791

 Score =  756 bits (391), Expect = 0.0
 Identities = 391/391 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggagaagccctgtcttgaaaaaacaaaaacaaacaaaaaaatatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccagggagaagccctgtcttgaaaaaacaaaaacaaacaaaaaaatatggaa 260

                                                                       
Query: 61  tctcagccttgatctcatgtctccttagtcagggtcatcactcggatcaggttgccatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcagccttgatctcatgtctccttagtcagggtcatcactcggatcaggttgccatgg 320

                                                                       
Query: 121 gaacctatggatgtatttgagtctgaagggctccactctgggtggtgggcagtctaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacctatggatgtatttgagtctgaagggctccactctgggtggtgggcagtctaagga 380

                                                                       
Query: 181 gctgacaggagataatgctaagcacccagtgaggttagttagagtggtggccactgacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgacaggagataatgctaagcacccagtgaggttagttagagtggtggccactgacat 440

                                                                       
Query: 241 cagtacaagtcagatatcacaggaataaacagcatgataatgttacctgacagttttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtacaagtcagatatcacaggaataaacagcatgataatgttacctgacagttttaaa 500

                                                                       
Query: 301 atgtaagaaagaagcaaacactgtgggtcttgctgctcttgtgttatattatgagtgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaagaaagaagcaaacactgtgggtcttgctgctcttgtgttatattatgagtgaaa 560

                                          
Query: 361 ggtttttggggctggagagacagctcagtag 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 ggtttttggggctggagagacagctcagtag 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information