BAC Information

Click to search

BAC

Clone NameMSMg01-514C07
Chromosome13 (Build37)
Map Location 51,781,885 - 51,782,536
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2
Downstream geneSema4d, Gadd45g, LOC100040321, Diras2, LOC100040572, Syk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514C07.T7 (MSMg01no514_c07.b1)MSMg01-514C07.TJ (MSMg01no514_c07.g1)
ACCAG586698AG586699
length733743
length of high quality
(start - end)
468 (73 - 540)655 (71 - 725)
definitionCHROMAT_FILE: MSMg01no514_c07.b1 PHD_FILE: MSMg01no514_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:55 2005CHROMAT_FILE: MSMg01no514_c07.g1 PHD_FILE: MSMg01no514_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTC
CTCCCATTTTTCCTAACAAAAACACCAAATGCACTAAACAAAGAAAGAAT
TTTAAAAGCAGGAGGGAAAAAGGTCAAGTAGAATATAAAGGCAGACCTAT
CAGAATTACACCATTCTTCTCACCAGAGACTATGAAACCTAGAAGTTCCT
GAGCAGAGGTCATACAGACCCTAAGAGAACACAAGTGCCAGGCCAAGCTA
CTATACCCAGCAAAACTCTCAATCACCATAGACGGAGAAAACAAGATATT
CCATGACAAAACCAATTTTACACAATATCTTTATAGATAGAAAACACCAA
GGAGTGAAACTACACCCTAGAAGAAGCAAGAAAGTAATCTTTCAACGAAC
TCACACAAACATAATTCCACCTCTAACAAGAAAATTAACAGGAAGTAACA
ATCACTTTTCCTTAATATCTCTTAATATGAAAATTAATATTACCAACATA
TCCTAATCTATTGAAGTTCAAAAATATGAGGAATTAAAAATTTGTTGGCA
GTCATCCCATGGTCTCTCTAATTTGGTAATGGGAGAAATAGGTCCAATAT
TGTACAATCCATATACACTTTCTGCTTGTTTGTACATGACAGGGTCTTGC
TGTGTGCCACATAATGGTCTTGAAATCATGCTTCTCCTATCTCAGCCTCT
CTATTAGTAGGAGTGATTTTACACTATACTATG
ACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGCTGTTACTGAGGCTAGTAGGATCAAG
GATATGACAATGTTGTAAGAGGAGACCAAAACACATTTTAGGTCACGTAC
AGGCCAGTAGCTTTTTCCTAGGTCCCAAGGCTGCCCCAGCCCCTGGAACT
CACTGCTTTCATGAGAGCAGGAGACTAGCTGCTGTTGAAGAACATGGGAA
GGTGGGACTGTCACTACGTACAAGCTTGTGGAAGAGGCTTCCTCAGGAAG
GGTGCCCTCACATAGGCTCAAGTCACTGTGCTGCCCCTTGGCTAGATTTA
CCCTGCGGTTAGCTGCCACACACAAGCAGGGAGCTCTAACCTTGGGGAGG
CCTAAGTATGTGCATCAGATAACTGTCAGGCTGTCACAGTGAGTGTTGCT
AGTCCTCTCATCAGAGCCCATGCAGATCTCCCCTCCAAGGGTCCTCTTTG
ACACTAGGAGACGCCAATCATCTCAGCCATTGACCACAGCCTCTTTCTGA
AGGCTAAGCAGCATGGGCTCATAAGCACCTGTCTGAAACGAGAGCACACA
GTGCTGCCTTTGTCTCAAGAGTCCTGAGAGATGGGGCTGGAGAGATGGCT
CAGCCTGACTGCTCTTCCAAAAGTCCTGAATTCAATTCCCAGCAACCACA
TGGTGGTTCACAACCATCTGTAATGAGATCTGACACCCTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_c07.g1 MSMg01no514_c07.g1 CHROMAT_FILE:
MSMg01no514_c07.g1 PHD_FILE: MSMg01no514_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:55 2005
         (655 letters)



>mm_chr13_51781775_51782829
          Length = 1055

 Score = 1236 bits (639), Expect = 0.0
 Identities = 650/655 (99%), Gaps = 3/655 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggctgttactgaggctagtaggatcaaggatatgacaatgttgtaagaggagaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgggctgttactgaggctagtaggatcaaggatatgacaatgttgtaagaggagaccaaa 703

                                                                       
Query: 61  acacattttaggtcacgtacaggccagtagctttttcctaggtcccaaggctgccccagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 acacattttaggtcacgtacaggccagtagctttttcctaggtcccaaggctgccccagc 643

                                                                       
Query: 121 ccctggaactcactgctttcatgagagcaggagactagctgctgttgaagaacatgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ccctggaactcactgctttcatgagagcaggagactagctgctgttgaagaacatgggaa 583

                                                                       
Query: 181 ggtgggactgtcactacgtacaagcttgtggaagaggcttcctcaggaagggtgccctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggtgggactgtcactacgtacaagcttgtggaagaggcttcctcaggaagggtgccctca 523

                                                                       
Query: 241 cataggctcaagtcactgtgctgccccttggctagatttaccctgcggttagctgccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cataggctcaagtcactgtgctgccccttggctagatttaccctgcggttagctgccaca 463

                                                                       
Query: 301 cacaagcagggagctctaaccttggggaggcctaagtatgtgcatcagataactgtcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 462 cacaagcagggagctctaaccttggggaggcctaagtatgtgcatcagataactgccagg 403

                                                                       
Query: 361 ctgtcacagtgagtgttgctagtcctctcatcagagcccatgcagatctcccctccaagg 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 402 ctgtcacagtgagtgttgctagtcctctcatcagagcccatgcaaatctcccctccaagg 343

                                                                       
Query: 421 gtcctctttgacactaggagacgccaatcatctcagccattgaccacagcctctttctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtcctctttgacactaggagacgccaatcatctcagccattgaccacagcctctttctga 283

                                                                       
Query: 481 aggctaagcagcatgggctcataagcacctgtctgaaacgagagcacacagtgctgcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggctaagcagcatgggctcataagcacctgtctgaaacgagagcacacagtgctgcctt 223

                                                                       
Query: 541 tgtctcaagagtcctgagagatggggctggagagatggctcagcctgactgctcttccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tgtctcaagagtcctgagagatggggctggagagatggctcagcctgactgctcttccaa 163

                                                                  
Query: 601 aagtcctgaattcaattcccagcaaccacatggtggttcacaaccatctgtaatg 655
           ||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 162 aagtcctgaattcaattcccagcaaccaca---tggttcacaaccatctgtaatg 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)