Query= MSMg01no514_j11.b1 MSMg01no514_j11.b1 CHROMAT_FILE:
MSMg01no514_j11.b1 PHD_FILE: MSMg01no514_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
(622 letters)
>mm_chr13_19846712_19847733
Length = 1022
Score = 1112 bits (575), Expect = 0.0
Identities = 608/619 (98%), Gaps = 2/619 (0%)
Strand = Plus / Minus
Query: 5 gaattctgccacatctgtcccaagagcaaatggctcagcccacgaccctgttaccagatg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattctgccacaactgtcccaagagcaaatggctcagcccacgaccctgttaccagatg 763
Query: 65 aactgaaccttttgcacacggatatccatcgcaggctaactcttgtctccagcagcagaa 124
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 762 aactgaaccttttgcacacggatatccatcgtaagctaactcttgtctccagcagcagaa 703
Query: 125 acaaagtcacattctggaactatagcttctgaatgtctgtaactgtgacgaaaacaagaa 184
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 702 acaaagtcacattctggaactatagcttctgaatgtctgtaaatgtgac-aaaacaagaa 644
Query: 185 agattgaaccactctatagactcttagttttgtgtctctgcaactgcttatggagagaca 244
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 agactgaaccactctatagactcttagttttgtgtctccgcaactgcttatggagagaca 584
Query: 245 gaaaggaaggcatcaaggctatttcgccaccttaaattctatgtaacaacatgttatgca 304
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 583 gaaaggaaggcatcaagactatttcaccaccttaaattctatgtaacaacatgttatgca 524
Query: 305 gctgggagcctactgtgaaagtaaataggccaatataat-tagtcctggcaaacagaaat 363
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 523 gctgggagcctactgtgaaagtaaataggccaatataatgtagtcctggcaaacagaaat 464
Query: 364 catttaacttgggcttctgatatttgaaaggcagtgatcatggaactttacaaagaaatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 catttaacttgggcttctgatatttgaaaggcagtgatcatggaactttacaaagaaatt 404
Query: 424 gattcaagtagcagaagcactgaccttactcttttctttcaggaatcagtcttactatgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 403 gattcaagtagcagaagcactgaccttactcttttctttcaggaatcagtcttactacgc 344
Query: 484 taacggtgtaaggaagtggtgagcagaagtgttggtggcattttcgtgcttgactcaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taacggtgtaaggaagtggtgagcagaagtgttggtggcattttcgtgcttgactcaaag 284
Query: 544 gaaaacaggactgcttttactcaggagaactgctcttttacagagaaaaaggaaaggtga 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaaaacaggactgcttttactcaggagaactgctcttttacagagaaaaaggaaaggtga 224
Query: 604 atagagggactacccagta 622
|||||||||||||||||||
Sbjct: 223 atagagggactacccagta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_j11.g1 MSMg01no514_j11.g1 CHROMAT_FILE:
MSMg01no514_j11.g1 PHD_FILE: MSMg01no514_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
(577 letters)
>mm_chr13_19693024_19694004
Length = 981
Score = 1042 bits (539), Expect = 0.0
Identities = 569/581 (97%), Gaps = 4/581 (0%)
Strand = Plus / Plus
Query: 1 tataactcatccttggttgtcttttgagctaaaagcaaaattggctctggccttgcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataactcatccttggttgtcttttgagctaaaagcaaaattggctctggccttgcagac 260
Query: 61 tgtagggaaagccggaaaaggaataatggagattactcttagaaaacaagagaagggtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagggaaagccggaaaaggaataatggagattactcttagaaaacaagagaagggtgc 320
Query: 121 tggtccaattctactgtatatatttctgtctttgagtgtagttggataaagacattgtgc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 tggtccaattctactgtatatatttctgtctttgaatgtagttggataaagacattgtgc 380
Query: 181 ttgtacgtcaatgtgccagctggcaactctgagacaacatcctagaaaggaaatagcaac 240
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ttgtatgtcaatgtgccagctggcaactctgagacaacatcctagaaagggaatagcaac 440
Query: 241 agacagagaaagaccagggtttggaagaaacttacatgaaacttagaaccatgtgtcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacagagaaagaccagggtttggaagaaacttacatgaaacttagaaccatgtgtcaca 500
Query: 301 aatacatcccaagagttct----gagcagcagacctctcctagtcccagcttttctgttc 356
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacatcccaagagttctttctgagcagcagacctctcctagtcccagcttttctgttc 560
Query: 357 ggcatcacgaatggggtacttaaaaccctgcatcacaggcactgtatactgaccctcgtg 416
|||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 561 ggcatcacgaatggggcacttaaaaccctgcatcacagacactgtatattgaccctcgtg 620
Query: 417 gaagttgtatgagagtctttccttgtagaatgagcaaagccctagcatttggctaatctt 476
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 621 gaagttgtatgagagtctttccttgcagaatgagcaaagccctagcatttgactaatctt 680
Query: 477 ggactctaaaatattgaagtcaaacctggtggtgagttaacctaactagctactgcctga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggactctaaaatattgaagtcaaacctggtggtgagttaacctaactagctactgcctga 740
Query: 537 gcagctaaaattaaatgattttctggcttgaattggggtat 577
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcagctaaaattaaatgattttctggcttgaattggggtat 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 981
Length adjustment: 10
Effective length of query: 567
Effective length of database: 971
Effective search space: 550557
Effective search space used: 550557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
