Query= MSMg01no514_l02.b1 MSMg01no514_l02.b1 CHROMAT_FILE:
MSMg01no514_l02.b1 PHD_FILE: MSMg01no514_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:41 2005
(592 letters)
>mm_chr13_68768149_68769141
Length = 993
Score = 1085 bits (561), Expect = 0.0
Identities = 574/579 (99%), Gaps = 3/579 (0%)
Strand = Plus / Plus
Query: 16 gaattcaggtcacatatatagagaaggaagaagaaaataacctccaaatatctagatatt 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaggtcacatatatagagaaggaagaagaaaataacctccaaatatctagatatt 275
Query: 76 tccacctccacctccccctctaaagtagaaatctgtatgcaaaaaaaagttataaaccac 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccacctccacctccccctctaaagtagaaatctgtatgcaaaaaaaagttataaaccac 335
Query: 136 acagatggagcctgacacaggaacttcttgtctgtggactaagaagaagcaaaatgtgtt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acagatggagcctgacacaggaacttcttgtctgtggactaagaagaagcaaaatgtgtt 395
Query: 196 gccaagaaaacaaaaaaaaaa--ttgtcaaagaagttcttacaaatcacaaattcctaca 253
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 396 gccaagaaaacaaaaaaaaaaaattgtcaaagaagttcttacaaatcacaaattcctaca 455
Query: 254 gacaccgtgcatatattacggggccagctgtgtgctaagtcaacggcttcaaacactgct 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gacaccgtgcatatattacggggccagctgtgtgctaagtcaacggcttcaaacactgct 515
Query: 314 ttttttttttttaagtaaggctttggaaaaggcaagtcatcatggaacatgctaaatatc 373
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttttttttttt-aagtaaggctttggaaaaggcaagtcatcatggaacatgctaaatatc 574
Query: 374 aacttaaagcttgttaaaaaatcttctcataaatcaagaagtttctttttcctcagaaaa 433
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 575 aacttaaagcttgttaaaaaatcttctcataaatcaagacgtttctttttcctcagaaaa 634
Query: 434 ttagaacttatgatttaaaaacaaaataaagcaaaaaactaaaaatctccccaagatgga 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttagaacttatgatttaaaaacaaaataaagcaaaaaactaaaaatctccccaagatgga 694
Query: 494 aggaagttggaaaactacctgggacacacattttgcgttcatcaagtctatgtgacccca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aggaagttggaaaactacctgggacacacattttgcgttcatcaagtctatgtgacccca 754
Query: 554 tggatgtagggctggattttagtgtttggtttctgagac 592
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 755 tggatgtaggactggattttagtgtttggtttctgagac 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_l02.g1 MSMg01no514_l02.g1 CHROMAT_FILE:
MSMg01no514_l02.g1 PHD_FILE: MSMg01no514_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:41 2005
(525 letters)
>mm_chr13_68931107_68932031
Length = 925
Score = 1002 bits (518), Expect = 0.0
Identities = 524/526 (99%), Gaps = 2/526 (0%)
Strand = Plus / Minus
Query: 1 agagaatgtttttctagaatgagaatacgtgggttttttttttccagaacagattattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 agagaatgtttttctagaatgagaatacgtgggttttttttttccagaacagattattaa 826
Query: 61 ataagacgaagaaatcatcttgcttaaaatagaattcagtctg-tgtaaaatagagcttc 119
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 825 ataagacgaagaaatcatcttgcttaaaatagaattcagtctgct-taaaatagagcttc 767
Query: 120 ggagatggctcagtgggtatgtctgaacggctcatttgccattcagacatgaggacctga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggagatggctcagtgggtatgtctgaacggctcatttgccattcagacatgaggacctga 707
Query: 180 gtatgaattcctacaagacagacagacagacagacagacagacagaagaatctttactct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 gtatgaattcctacaagacagacagacagacagacagacagacagaagaatctttactct 647
Query: 240 cagtgttcctgtgggaaggtgggaagcagtgacagaaatcctgaatgatcacaggtgaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cagtgttcctgtgggaaggtgggaagcagtgacagaaatcctgaatgatcacaggtgaca 587
Query: 300 gcctagctcaaacagctaaaagcaataaataggccctctctcagacaagatggaaggtcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcctagctcaaacagctaaaagcaataaataggccctctctcagacaagatggaaggtcg 527
Query: 360 gttctggcacctgggttgttctcttctctctacactttgctatggtctacatgtacatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttctggcacctgggttgttctcttctctctacactttgctatggtctacatgtacatga 467
Query: 420 ctacattcacacacaagaacctaaatattcatgcacgcacacactaccaccaccaccacc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctacattcacacacaagaacctaaatattcatgcacgcacacactaccaccaccaccacc 407
Query: 480 accaccaccaccaccaccaccacacagaccacacacagacaccaca 525
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 accaccaccaccaccaccaccacacagaccacacacagacaccaca 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
