Query= MSMg01no515_f22.b1 MSMg01no515_f22.b1 CHROMAT_FILE:
MSMg01no515_f22.b1 PHD_FILE: MSMg01no515_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:39 2005
(606 letters)
>mm_chr13_110047635_110048636
Length = 1002
Score = 1137 bits (588), Expect = 0.0
Identities = 597/602 (99%), Gaps = 4/602 (0%)
Strand = Plus / Plus
Query: 5 gaattctcaaaacagaattaagtttttatttctagaaagtagcacataatgcatcgtttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaaacagaattaagtttttatttctagaaagtagcacataatgcatcgtttg 264
Query: 65 gagaattcgaaggagtaggggtgactcgcaggtgcacctaaggacagcaattggtctttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagaattcgaaggagtaggggtgactcgcaggtgcacctaaggacagcaattggtctttg 324
Query: 125 aagataccctcagtcctgcagctacccaagaaccaaaccaccccccaacccacggtgctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagataccctcagtcctgcagctacccaagaaccaaaccaccccccaacccacggtgctc 384
Query: 185 cagggcagtggagattggccaacaaccttccccaggcttggtccatgtctaaccacaagg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggcagtggagattggccaacaaccttccccaggcttggtccatgtctaaccacaagg 444
Query: 245 cttggtgaggtcccaataggcaatttctcttctagtttagctaaattgtgatactcaaca 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggtgaggttccaataggcaatttctcttctagtttagctaaattgtgatactcaaca 504
Query: 305 gtgagccctgtccttatgcgagcatggccacgaagggccatttagaagaagaccacagtt 364
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgagccctgtccttatgc----atggccacgaagggccatttagaagaagaccacagtt 560
Query: 365 caaataatttacttttcttaacagccttatttggggtcactgaaagcaagaaccaggatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaataatttacttttcttaacagccttatttggggtcactgaaagcaagaaccaggatc 620
Query: 425 taggtgtgcctcaatgtagtgattttgccaacagagcccatgattgctggtaataggtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggtgtgcctcaatgtagtgattttgccaacagagcccatgattgctggtaataggtct 680
Query: 485 tcatttggtcactcagctcaaactatctacttagaactagccctagtattttgtctagtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatttggtcactcagctcaaactatctacttagaactagccctagtattttgtctagtc 740
Query: 545 ctttttctgtaaaaagtgttgcccttgctatctgtccttagaattaaactccctgagggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctttttctgtaaaaagtgttgcccttgctatctgtccttagaattaaactccctgagggc 800
Query: 605 aa 606
||
Sbjct: 801 aa 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1002
Length adjustment: 10
Effective length of query: 596
Effective length of database: 992
Effective search space: 591232
Effective search space used: 591232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_f22.g1 MSMg01no515_f22.g1 CHROMAT_FILE:
MSMg01no515_f22.g1 PHD_FILE: MSMg01no515_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:39 2005
(676 letters)
>mm_chr13_110229707_110230785
Length = 1079
Score = 1205 bits (623), Expect = 0.0
Identities = 657/669 (98%), Gaps = 3/669 (0%)
Strand = Plus / Minus
Query: 1 ttgtccttgtag--aaaaaaaaaacattactggggagaagaggattcatttctcataaat 58
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttgtccttgtaggaaaaaaaaaaacattactggggagaagaggattcatttctcataaat 610
Query: 59 tctaaagcagatg-ttaaaaaaaaaatggaattagtttcagaactgctaaggtttgatga 117
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctaaagcagatgtttaaaataaaaatggaattagtttcagaactgctaaggtttgatga 550
Query: 118 attgatggtcccaggtcaagaattcattcctggtaggaggaagaactaggggattccttt 177
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 549 attgatggtcccaggtcaagaattcattcctggtaggaggaagaactagaggattccttt 490
Query: 178 aaagcaatttgaattttgcatgcagaaagatggcaccatgtagcacaaagggacttgagg 237
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 489 aaagcaatttgaattgtgcatgcagaaagatggcaccatgtagcacaaagggacatgagg 430
Query: 238 aaagttactgggacttcctgtgatggaggcaatgtccttgaagcacctttgtgtagaagg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaagttactgggacttcctgtgatggaggcaatgtccttgaagcacctttgtgtagaagg 370
Query: 298 gaccagatctctctcctaaggtcatttgtgagccttcccagaatcctttcggcttgaatt 357
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 369 gaccagatctctctcctaaggtcatttgtgagccttcccagaaccctttcggctggaatt 310
Query: 358 gttctcagcagactctcaacgcttgcaatcaggtattacacagtagtgcaaactggtttg 417
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 309 gttctcagcagactctcaacgcttgcaatcaggtatcacacagtaatgcaaactggtttg 250
Query: 418 ttagattgtatacttaaatatcattatttaagacctaggtgtactagcaatgtccctggc 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttagagtgtatacttaaatatcattatttaagacctaggtgtactagcaatgtccctggc 190
Query: 478 catcttctaagtgcttcacaggataaccccacttaatccactcagtgatgctgtgaggcg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 catcttctaagtgcttcacaggataaccccacttaatccactcagtgatgctgtgaggcg 130
Query: 538 gagatgatctctgacccggtgccaaagaggagtggaggcactcagaagttaaatattgct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gagatgatctctgacccggtgccaaagaggagtggaggcactcagaagttaaatattgct 70
Query: 598 ggaagacaaataacacatttgcagaaagaagtctgaccacatggctaagatttttgcctg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ggaagacaaataacacatttgcagaaagaagtctgaccacatggctaagatttttgcctg 10
Query: 658 tattattct 666
|||||||||
Sbjct: 9 tattattct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1079
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1069
Effective search space: 711954
Effective search space used: 711954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
